miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 121554 0.66 0.772373
Target:  5'- uCCgGCACCuccucgagcgcggcGCGCGCGCGGaCGCcACc -3'
miRNA:   3'- -GGaCGUGGu-------------CGUGCGCGUCaGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 68958 0.66 0.777927
Target:  5'- --gGCACCGGCGUGCccuucCAGUCGCccGACu -3'
miRNA:   3'- ggaCGUGGUCGUGCGc----GUCAGCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 47607 0.66 0.749735
Target:  5'- --cGaCGCC-GCGCGCGCGGcCGCG-Cu -3'
miRNA:   3'- ggaC-GUGGuCGUGCGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 36440 0.66 0.759246
Target:  5'- cCCgGCugCAGC-UGCGCGGgCG-GACg -3'
miRNA:   3'- -GGaCGugGUCGuGCGCGUCaGCgCUG- -5'
25508 3' -58.6 NC_005337.1 + 84002 0.66 0.768646
Target:  5'- gCCUGCACgGGgcacaCugGCGCuucUGCGGCg -3'
miRNA:   3'- -GGACGUGgUC-----GugCGCGucaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 3866 0.66 0.777927
Target:  5'- gUCUgGCACCGGC-CGCGCAugaGCGuCu -3'
miRNA:   3'- -GGA-CGUGGUCGuGCGCGUcagCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 85847 0.66 0.777005
Target:  5'- --aGCGCCAGCACGUccgcguccgccauGuCGGgCGCGAUc -3'
miRNA:   3'- ggaCGUGGUCGUGCG-------------C-GUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 29472 0.66 0.777927
Target:  5'- --aGCACCAGC-CGCGgGaaCGCGAg -3'
miRNA:   3'- ggaCGUGGUCGuGCGCgUcaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 2350 0.66 0.777927
Target:  5'- uCCgGgGCCAGCGCGCcGCAGcacCGguCGACc -3'
miRNA:   3'- -GGaCgUGGUCGUGCG-CGUCa--GC--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 73400 0.66 0.768646
Target:  5'- --cGCGCCcGCACcCGCAGcUCGUgGACg -3'
miRNA:   3'- ggaCGUGGuCGUGcGCGUC-AGCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 120797 0.66 0.777927
Target:  5'- gCUGgAgCGGCGCGaGaCGGUCuGCGACg -3'
miRNA:   3'- gGACgUgGUCGUGCgC-GUCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 6550 0.66 0.777005
Target:  5'- gUUGCGCCGGaagacuuccgcUACgGCGCagaacccGGUCGCGGCc -3'
miRNA:   3'- gGACGUGGUC-----------GUG-CGCG-------UCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 19537 0.66 0.777927
Target:  5'- gCCggaGCccguCCAGCACGCGCcggacGUCGUaaacGGCg -3'
miRNA:   3'- -GGa--CGu---GGUCGUGCGCGu----CAGCG----CUG- -5'
25508 3' -58.6 NC_005337.1 + 8892 0.66 0.759246
Target:  5'- gCC-GCGCCA-CAgGCGCGGcCGCGuCu -3'
miRNA:   3'- -GGaCGUGGUcGUgCGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 15348 0.66 0.749735
Target:  5'- gCUGCGCCcGCGCGaCGCuuccaggCGCGcACu -3'
miRNA:   3'- gGACGUGGuCGUGC-GCGuca----GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 60009 0.66 0.796095
Target:  5'- -aUGCGgcuauuuuUCGGCGCGCGgAGacccgCGCGGCg -3'
miRNA:   3'- ggACGU--------GGUCGUGCGCgUCa----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 38296 0.66 0.768646
Target:  5'- --aGCACCGGUggagggGCGCGCGcGUCGagcgcaacgacCGACg -3'
miRNA:   3'- ggaCGUGGUCG------UGCGCGU-CAGC-----------GCUG- -5'
25508 3' -58.6 NC_005337.1 + 19915 0.66 0.777927
Target:  5'- nCUGgACCAGguaggGCGUGUGGUaCGCGAUg -3'
miRNA:   3'- gGACgUGGUCg----UGCGCGUCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 83951 0.66 0.777927
Target:  5'- --gGUACCgGGCGgucCGCGCAGggcaGCGGCg -3'
miRNA:   3'- ggaCGUGG-UCGU---GCGCGUCag--CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 109446 0.66 0.768646
Target:  5'- --cGCGCCgcucgAGCACgGCGaggaAGUCGCGGa -3'
miRNA:   3'- ggaCGUGG-----UCGUG-CGCg---UCAGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.