miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 22746 0.73 0.392968
Target:  5'- aCCUGCACgCGGCGgaGCGCGGgcucgguaUGCGGCu -3'
miRNA:   3'- -GGACGUG-GUCGUg-CGCGUCa-------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 31344 0.74 0.352645
Target:  5'- aCUGCACCAGCACcaGCuuGUGGUCGCa-- -3'
miRNA:   3'- gGACGUGGUCGUG--CG--CGUCAGCGcug -5'
25508 3' -58.6 NC_005337.1 + 128065 0.74 0.352645
Target:  5'- gCUGCACCAcCACaUGCAGUCGCcGCg -3'
miRNA:   3'- gGACGUGGUcGUGcGCGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 19884 0.74 0.352645
Target:  5'- -aUGCACCGGCacaggaGCGCGUAGUcCGCGuGCu -3'
miRNA:   3'- ggACGUGGUCG------UGCGCGUCA-GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 95764 0.73 0.368417
Target:  5'- cCCUGCACCAgGCGCGCcCGG--GCGGCc -3'
miRNA:   3'- -GGACGUGGU-CGUGCGcGUCagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 97053 0.73 0.368417
Target:  5'- aCCUcauCGCCAcGCACGCGCGGcgCGCGGu -3'
miRNA:   3'- -GGAc--GUGGU-CGUGCGCGUCa-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 31233 0.73 0.376483
Target:  5'- gCUGCAgCAGCAUcaGCAgGUCGCGGCu -3'
miRNA:   3'- gGACGUgGUCGUGcgCGU-CAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 68342 0.73 0.384667
Target:  5'- gCCcGUGCCGGaggACgGCGCGGUCGCGAUc -3'
miRNA:   3'- -GGaCGUGGUCg--UG-CGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 13070 0.73 0.392968
Target:  5'- gCUGCugCGcGCGgGCGCGGaaGCGGCg -3'
miRNA:   3'- gGACGugGU-CGUgCGCGUCagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 60946 0.74 0.34494
Target:  5'- gCC-GCGCCGGCAUGCGCAuGgggCGCG-Cg -3'
miRNA:   3'- -GGaCGUGGUCGUGCGCGU-Ca--GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 110354 0.74 0.329896
Target:  5'- --cGCGCCuGCcgcggGCGCGCGGgcgCGCGGCa -3'
miRNA:   3'- ggaCGUGGuCG-----UGCGCGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 37725 0.74 0.315341
Target:  5'- aCCUGCAgCGGCAucUGCGagaAGUCGaCGGCg -3'
miRNA:   3'- -GGACGUgGUCGU--GCGCg--UCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 94786 0.8 0.134335
Target:  5'- aCCaGCAgCAGCGCGCGCGcGUCGcCGGCa -3'
miRNA:   3'- -GGaCGUgGUCGUGCGCGU-CAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 133682 0.78 0.200922
Target:  5'- gCCUGCguggcguucGCCGGCGgcuucCGCGCGGcCGCGGCg -3'
miRNA:   3'- -GGACG---------UGGUCGU-----GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 100684 0.77 0.22156
Target:  5'- --cGCGCC-GCGCGCGCGGccgaCGCGACg -3'
miRNA:   3'- ggaCGUGGuCGUGCGCGUCa---GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 132097 0.76 0.238201
Target:  5'- gCCUGCGCCGuGCGCgucgGCGCcGUgCGCGGCa -3'
miRNA:   3'- -GGACGUGGU-CGUG----CGCGuCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 670 0.76 0.255875
Target:  5'- uCCUGCAgCAGCagcgggcccuuGCGCGCGGagGCGAa -3'
miRNA:   3'- -GGACGUgGUCG-----------UGCGCGUCagCGCUg -5'
25508 3' -58.6 NC_005337.1 + 39747 0.76 0.262001
Target:  5'- uCCUGCACCcGUACGUGCuGUaCGCGcGCg -3'
miRNA:   3'- -GGACGUGGuCGUGCGCGuCA-GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 29723 0.75 0.27461
Target:  5'- --cGCGCaCGcGCGCGCGguGUUGCGGCg -3'
miRNA:   3'- ggaCGUG-GU-CGUGCGCguCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 126446 0.75 0.281094
Target:  5'- gCgUGUACCAcCGCGCGCuGUCGCGGa -3'
miRNA:   3'- -GgACGUGGUcGUGCGCGuCAGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.