miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 130792 1.11 0.001006
Target:  5'- uCCUGCACCAGCACGCGCAGUCGCGACg -3'
miRNA:   3'- -GGACGUGGUCGUGCGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 126197 0.74 0.352645
Target:  5'- aCUGUGCCGucGCGCGUccucGCGGUCGCGGa -3'
miRNA:   3'- gGACGUGGU--CGUGCG----CGUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 106023 0.73 0.376483
Target:  5'- --cGCACguGCGCGUGguGccgCGCGACg -3'
miRNA:   3'- ggaCGUGguCGUGCGCguCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 60009 0.66 0.796095
Target:  5'- -aUGCGgcuauuuuUCGGCGCGCGgAGacccgCGCGGCg -3'
miRNA:   3'- ggACGU--------GGUCGUGCGCgUCa----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 57275 0.8 0.148781
Target:  5'- gCCgcgcgGgGCCGGCGCGCGCGGcUGCGGCg -3'
miRNA:   3'- -GGa----CgUGGUCGUGCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 133682 0.78 0.200922
Target:  5'- gCCUGCguggcguucGCCGGCGgcuucCGCGCGGcCGCGGCg -3'
miRNA:   3'- -GGACG---------UGGUCGU-----GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 33523 0.77 0.226994
Target:  5'- gCCgUGCGCCGgcuGCACGCGUcGUCGcCGACg -3'
miRNA:   3'- -GG-ACGUGGU---CGUGCGCGuCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 30634 0.77 0.226994
Target:  5'- gCCUGCGCgCAGCcgaggaugGCGCGCGG-CGCGGa -3'
miRNA:   3'- -GGACGUG-GUCG--------UGCGCGUCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 65121 0.76 0.262001
Target:  5'- gCUGCAgCAGCACGCGCgAGaCGCG-Cu -3'
miRNA:   3'- gGACGUgGUCGUGCGCG-UCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 8159 0.74 0.329896
Target:  5'- --cGCGCaCGGCguGCGCGUAGUUGUGGCg -3'
miRNA:   3'- ggaCGUG-GUCG--UGCGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 87920 0.75 0.301276
Target:  5'- gCCUGCGCCGGCGCuucGUGCAcGcCgGCGGCa -3'
miRNA:   3'- -GGACGUGGUCGUG---CGCGU-CaG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 670 0.76 0.255875
Target:  5'- uCCUGCAgCAGCagcgggcccuuGCGCGCGGagGCGAa -3'
miRNA:   3'- -GGACGUgGUCG-----------UGCGCGUCagCGCUg -5'
25508 3' -58.6 NC_005337.1 + 132374 0.9 0.031144
Target:  5'- uCCUGCACCAGCACGCGgAGUCGUaccGGCc -3'
miRNA:   3'- -GGACGUGGUCGUGCGCgUCAGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 4486 0.74 0.322557
Target:  5'- cUCUGCaucGCCAGCACGUGCA---GCGGCg -3'
miRNA:   3'- -GGACG---UGGUCGUGCGCGUcagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 4134 0.82 0.10644
Target:  5'- gCgaGCGCCAGCGCGCGCGaccacGUaCGCGACa -3'
miRNA:   3'- -GgaCGUGGUCGUGCGCGU-----CA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 62849 0.76 0.249867
Target:  5'- aCUcCACCAGCAgGCGCAGgaaCGCGAg -3'
miRNA:   3'- gGAcGUGGUCGUgCGCGUCa--GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 66303 0.74 0.322557
Target:  5'- cCCUGgACCgcgugAGCGC-CGCGGUCGCGGg -3'
miRNA:   3'- -GGACgUGG-----UCGUGcGCGUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 91731 0.73 0.376483
Target:  5'- gCC-GCACCAGCGCcCGCAG-CGCGuCc -3'
miRNA:   3'- -GGaCGUGGUCGUGcGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 80354 0.81 0.120877
Target:  5'- aCCUGaACCAGCACGCGUucgcgccGGUCGCGGa -3'
miRNA:   3'- -GGACgUGGUCGUGCGCG-------UCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 113093 0.77 0.22156
Target:  5'- --cGgACCuGCGCGCGCAGguccgCGCGACg -3'
miRNA:   3'- ggaCgUGGuCGUGCGCGUCa----GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.