miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 542 0.67 0.704814
Target:  5'- gCUGCcggcgccacuccgccACCGGcCGCGCGUAcGcCGCGGCc -3'
miRNA:   3'- gGACG---------------UGGUC-GUGCGCGU-CaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 542 0.67 0.704814
Target:  5'- gCUGCcggcgccacuccgccACCGGcCGCGCGUAcGcCGCGGCc -3'
miRNA:   3'- gGACG---------------UGGUC-GUGCGCGU-CaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 670 0.76 0.255875
Target:  5'- uCCUGCAgCAGCagcgggcccuuGCGCGCGGagGCGAa -3'
miRNA:   3'- -GGACGUgGUCG-----------UGCGCGUCagCGCUg -5'
25508 3' -58.6 NC_005337.1 + 670 0.76 0.255875
Target:  5'- uCCUGCAgCAGCagcgggcccuuGCGCGCGGagGCGAa -3'
miRNA:   3'- -GGACGUgGUCG-----------UGCGCGUCagCGCUg -5'
25508 3' -58.6 NC_005337.1 + 1323 0.66 0.777927
Target:  5'- -gUGCACguGCACGa--GGcCGCGGCg -3'
miRNA:   3'- ggACGUGguCGUGCgcgUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 1517 0.69 0.586698
Target:  5'- --cGCGCCAGCGCGUccgccacuucguguGCGGgcgGCGACc -3'
miRNA:   3'- ggaCGUGGUCGUGCG--------------CGUCag-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 1876 0.68 0.630222
Target:  5'- gCUGUucACCAGCGCuauGCGCAcUCgGCGGCc -3'
miRNA:   3'- gGACG--UGGUCGUG---CGCGUcAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 2176 0.66 0.796095
Target:  5'- aCgGCGCCGacgcGCACgGCGCAG--GCGGCg -3'
miRNA:   3'- gGaCGUGGU----CGUG-CGCGUCagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 2219 0.73 0.384667
Target:  5'- cCCggGcCGCgAGCGCGCGCAGgaaccgCGCGAg -3'
miRNA:   3'- -GGa-C-GUGgUCGUGCGCGUCa-----GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 2350 0.66 0.777927
Target:  5'- uCCgGgGCCAGCGCGCcGCAGcacCGguCGACc -3'
miRNA:   3'- -GGaCgUGGUCGUGCG-CGUCa--GC--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 2939 0.67 0.714718
Target:  5'- gCCgacGCGCaCGGCGCGCaugagcGCGGUCuccgccucgcacucgGCGACg -3'
miRNA:   3'- -GGa--CGUG-GUCGUGCG------CGUCAG---------------CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 2996 0.67 0.743016
Target:  5'- gCCUGCGacuggcggacgggcuCCGGCagcgcguGCGCGCcgauGUgCGCGACc -3'
miRNA:   3'- -GGACGU---------------GGUCG-------UGCGCGu---CA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 3122 0.67 0.710765
Target:  5'- aCC-GCgGCCGGCcucgcguccaGCGCGCGGUCGauGCa -3'
miRNA:   3'- -GGaCG-UGGUCG----------UGCGCGUCAGCgcUG- -5'
25508 3' -58.6 NC_005337.1 + 3227 0.69 0.624134
Target:  5'- uCC-GCACCcagggccaggaGGCGCGCGCacgccuugucguugcGGUgCGCGGCg -3'
miRNA:   3'- -GGaCGUGG-----------UCGUGCGCG---------------UCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 3486 0.73 0.400537
Target:  5'- aCUGCGCguGCugGUGCAggagguuGUUGUGGCg -3'
miRNA:   3'- gGACGUGguCGugCGCGU-------CAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 3494 0.68 0.64037
Target:  5'- gCC-GCACCGGCgGCGCcCAGgucugCGCGAa -3'
miRNA:   3'- -GGaCGUGGUCG-UGCGcGUCa----GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 3643 0.67 0.730417
Target:  5'- uCCaGCGCC-GCGgccucgucgucCGCGCAGUCGgGGg -3'
miRNA:   3'- -GGaCGUGGuCGU-----------GCGCGUCAGCgCUg -5'
25508 3' -58.6 NC_005337.1 + 3776 0.67 0.700835
Target:  5'- aCCUccCACgAGCAgGCGCugaAGUCGCGGu -3'
miRNA:   3'- -GGAc-GUGgUCGUgCGCG---UCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 3866 0.66 0.777927
Target:  5'- gUCUgGCACCGGC-CGCGCAugaGCGuCu -3'
miRNA:   3'- -GGA-CGUGGUCGuGCGCGUcagCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 4106 0.7 0.539818
Target:  5'- uCCU-CACC-GCGCGCGCGGagacgCGCgGACa -3'
miRNA:   3'- -GGAcGUGGuCGUGCGCGUCa----GCG-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.