miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 133682 0.78 0.200922
Target:  5'- gCCUGCguggcguucGCCGGCGgcuucCGCGCGGcCGCGGCg -3'
miRNA:   3'- -GGACG---------UGGUCGU-----GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 133682 0.78 0.200922
Target:  5'- gCCUGCguggcguucGCCGGCGgcuucCGCGCGGcCGCGGCg -3'
miRNA:   3'- -GGACG---------UGGUCGU-----GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 133123 0.66 0.749735
Target:  5'- gCUcCGCCGGCGCGCuccccgcggaGCuGGUCGCGcGCg -3'
miRNA:   3'- gGAcGUGGUCGUGCG----------CG-UCAGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 132962 0.67 0.720628
Target:  5'- uCgUGCACguGCACcugGUGGUCGUGACc -3'
miRNA:   3'- -GgACGUGguCGUGcg-CGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 132770 0.73 0.376483
Target:  5'- --cGCGCUGGCGCGCGCcGagGUGACg -3'
miRNA:   3'- ggaCGUGGUCGUGCGCGuCagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 132716 0.69 0.569624
Target:  5'- gCC-GCGCCAuGCGCGCgguaucaaGCGGUCGCcGCc -3'
miRNA:   3'- -GGaCGUGGU-CGUGCG--------CGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 132587 0.69 0.599819
Target:  5'- cCCUGCACUucgccaccgGGCAC-CGCAacGaCGCGGCg -3'
miRNA:   3'- -GGACGUGG---------UCGUGcGCGU--CaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 132585 0.69 0.608927
Target:  5'- gCUGUugCGacGCGCGCuGCGGcugcgguucagguUCGCGACg -3'
miRNA:   3'- gGACGugGU--CGUGCG-CGUC-------------AGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 132374 0.9 0.031144
Target:  5'- uCCUGCACCAGCACGCGgAGUCGUaccGGCc -3'
miRNA:   3'- -GGACGUGGUCGUGCGCgUCAGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 132097 0.76 0.238201
Target:  5'- gCCUGCGCCGuGCGCgucgGCGCcGUgCGCGGCa -3'
miRNA:   3'- -GGACGUGGU-CGUG----CGCGuCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 132044 0.67 0.700835
Target:  5'- uCCUcGCGcgguuCCuGCGCGCGC--UCGCGGCc -3'
miRNA:   3'- -GGA-CGU-----GGuCGUGCGCGucAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 131470 0.72 0.418556
Target:  5'- uCCUGCAgCAGCGCcuaGUGCAcaUGCGGCa -3'
miRNA:   3'- -GGACGUgGUCGUG---CGCGUcaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 131350 0.68 0.674776
Target:  5'- -gUGCACUuuuucgagcacgagaAGCGCGCGCGGUacgucuucgacCGCGGg -3'
miRNA:   3'- ggACGUGG---------------UCGUGCGCGUCA-----------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 131159 0.66 0.749735
Target:  5'- --cGCgagGCCGGcCGCGguCGCGGUCGCGGa -3'
miRNA:   3'- ggaCG---UGGUC-GUGC--GCGUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 131145 0.7 0.5497
Target:  5'- gCUGUACCGGCGCGUGCuGcacaCGCuGCu -3'
miRNA:   3'- gGACGUGGUCGUGCGCGuCa---GCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 130898 0.67 0.734309
Target:  5'- gCUGCACCucauGGC-CGCGCacaccuccugcaagcGGUCGCuGAUc -3'
miRNA:   3'- gGACGUGG----UCGuGCGCG---------------UCAGCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 130792 1.11 0.001006
Target:  5'- uCCUGCACCAGCACGCGCAGUCGCGACg -3'
miRNA:   3'- -GGACGUGGUCGUGCGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 130576 0.68 0.660638
Target:  5'- cCCUgGCGCCgaggacaagaAGC-CGCGuCGGgCGCGACg -3'
miRNA:   3'- -GGA-CGUGG----------UCGuGCGC-GUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 129684 1.02 0.004705
Target:  5'- uCCUGCACCAGCACGCGCAGUCGCcGCg -3'
miRNA:   3'- -GGACGUGGUCGUGCGCGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 129523 0.66 0.78708
Target:  5'- --cGCGCUgcuCGCGCGCGG-CGCGAg -3'
miRNA:   3'- ggaCGUGGuc-GUGCGCGUCaGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.