miRNA display CGI


Results 1 - 20 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 130792 1.11 0.001006
Target:  5'- uCCUGCACCAGCACGCGCAGUCGCGACg -3'
miRNA:   3'- -GGACGUGGUCGUGCGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 129684 1.02 0.004705
Target:  5'- uCCUGCACCAGCACGCGCAGUCGCcGCg -3'
miRNA:   3'- -GGACGUGGUCGUGCGCGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 132374 0.9 0.031144
Target:  5'- uCCUGCACCAGCACGCGgAGUCGUaccGGCc -3'
miRNA:   3'- -GGACGUGGUCGUGCGCgUCAGCG---CUG- -5'
25508 3' -58.6 NC_005337.1 + 4134 0.82 0.10644
Target:  5'- gCgaGCGCCAGCGCGCGCGaccacGUaCGCGACa -3'
miRNA:   3'- -GgaCGUGGUCGUGCGCGU-----CA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 80354 0.81 0.120877
Target:  5'- aCCUGaACCAGCACGCGUucgcgccGGUCGCGGa -3'
miRNA:   3'- -GGACgUGGUCGUGCGCG-------UCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 94786 0.8 0.134335
Target:  5'- aCCaGCAgCAGCGCGCGCGcGUCGcCGGCa -3'
miRNA:   3'- -GGaCGUgGUCGUGCGCGU-CAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 57275 0.8 0.148781
Target:  5'- gCCgcgcgGgGCCGGCGCGCGCGGcUGCGGCg -3'
miRNA:   3'- -GGa----CgUGGUCGUGCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 133682 0.78 0.200922
Target:  5'- gCCUGCguggcguucGCCGGCGgcuucCGCGCGGcCGCGGCg -3'
miRNA:   3'- -GGACG---------UGGUCGU-----GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 133682 0.78 0.200922
Target:  5'- gCCUGCguggcguucGCCGGCGgcuucCGCGCGGcCGCGGCg -3'
miRNA:   3'- -GGACG---------UGGUCGU-----GCGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 100684 0.77 0.22156
Target:  5'- --cGCGCC-GCGCGCGCGGccgaCGCGACg -3'
miRNA:   3'- ggaCGUGGuCGUGCGCGUCa---GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 113093 0.77 0.22156
Target:  5'- --cGgACCuGCGCGCGCAGguccgCGCGACg -3'
miRNA:   3'- ggaCgUGGuCGUGCGCGUCa----GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 33523 0.77 0.226994
Target:  5'- gCCgUGCGCCGgcuGCACGCGUcGUCGcCGACg -3'
miRNA:   3'- -GG-ACGUGGU---CGUGCGCGuCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 30634 0.77 0.226994
Target:  5'- gCCUGCGCgCAGCcgaggaugGCGCGCGG-CGCGGa -3'
miRNA:   3'- -GGACGUG-GUCG--------UGCGCGUCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 132097 0.76 0.238201
Target:  5'- gCCUGCGCCGuGCGCgucgGCGCcGUgCGCGGCa -3'
miRNA:   3'- -GGACGUGGU-CGUG----CGCGuCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 62849 0.76 0.249867
Target:  5'- aCUcCACCAGCAgGCGCAGgaaCGCGAg -3'
miRNA:   3'- gGAcGUGGUCGUgCGCGUCa--GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 670 0.76 0.255875
Target:  5'- uCCUGCAgCAGCagcgggcccuuGCGCGCGGagGCGAa -3'
miRNA:   3'- -GGACGUgGUCG-----------UGCGCGUCagCGCUg -5'
25508 3' -58.6 NC_005337.1 + 670 0.76 0.255875
Target:  5'- uCCUGCAgCAGCagcgggcccuuGCGCGCGGagGCGAa -3'
miRNA:   3'- -GGACGUgGUCG-----------UGCGCGUCagCGCUg -5'
25508 3' -58.6 NC_005337.1 + 39747 0.76 0.262001
Target:  5'- uCCUGCACCcGUACGUGCuGUaCGCGcGCg -3'
miRNA:   3'- -GGACGUGGuCGUGCGCGuCA-GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 65121 0.76 0.262001
Target:  5'- gCUGCAgCAGCACGCGCgAGaCGCG-Cu -3'
miRNA:   3'- gGACGUgGUCGUGCGCG-UCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 29723 0.75 0.27461
Target:  5'- --cGCGCaCGcGCGCGCGguGUUGCGGCg -3'
miRNA:   3'- ggaCGUG-GU-CGUGCGCguCAGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.