miRNA display CGI


Results 21 - 40 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 47876 0.75 0.27461
Target:  5'- --cGCGCCGGaCGCGCGCAGcCGCcuGGCg -3'
miRNA:   3'- ggaCGUGGUC-GUGCGCGUCaGCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 126446 0.75 0.281094
Target:  5'- gCgUGUACCAcCGCGCGCuGUCGCGGa -3'
miRNA:   3'- -GgACGUGGUcGUGCGCGuCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 87920 0.75 0.301276
Target:  5'- gCCUGCGCCGGCGCuucGUGCAcGcCgGCGGCa -3'
miRNA:   3'- -GGACGUGGUCGUG---CGCGU-CaG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 37725 0.74 0.315341
Target:  5'- aCCUGCAgCGGCAucUGCGagaAGUCGaCGGCg -3'
miRNA:   3'- -GGACGUgGUCGU--GCGCg--UCAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 66303 0.74 0.322557
Target:  5'- cCCUGgACCgcgugAGCGC-CGCGGUCGCGGg -3'
miRNA:   3'- -GGACgUGG-----UCGUGcGCGUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 4486 0.74 0.322557
Target:  5'- cUCUGCaucGCCAGCACGUGCA---GCGGCg -3'
miRNA:   3'- -GGACG---UGGUCGUGCGCGUcagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 110354 0.74 0.329896
Target:  5'- --cGCGCCuGCcgcggGCGCGCGGgcgCGCGGCa -3'
miRNA:   3'- ggaCGUGGuCG-----UGCGCGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 8159 0.74 0.329896
Target:  5'- --cGCGCaCGGCguGCGCGUAGUUGUGGCg -3'
miRNA:   3'- ggaCGUG-GUCG--UGCGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 60946 0.74 0.34494
Target:  5'- gCC-GCGCCGGCAUGCGCAuGgggCGCG-Cg -3'
miRNA:   3'- -GGaCGUGGUCGUGCGCGU-Ca--GCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 31344 0.74 0.352645
Target:  5'- aCUGCACCAGCACcaGCuuGUGGUCGCa-- -3'
miRNA:   3'- gGACGUGGUCGUG--CG--CGUCAGCGcug -5'
25508 3' -58.6 NC_005337.1 + 128065 0.74 0.352645
Target:  5'- gCUGCACCAcCACaUGCAGUCGCcGCg -3'
miRNA:   3'- gGACGUGGUcGUGcGCGUCAGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 19884 0.74 0.352645
Target:  5'- -aUGCACCGGCacaggaGCGCGUAGUcCGCGuGCu -3'
miRNA:   3'- ggACGUGGUCG------UGCGCGUCA-GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 126197 0.74 0.352645
Target:  5'- aCUGUGCCGucGCGCGUccucGCGGUCGCGGa -3'
miRNA:   3'- gGACGUGGU--CGUGCG----CGUCAGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 97053 0.73 0.368417
Target:  5'- aCCUcauCGCCAcGCACGCGCGGcgCGCGGu -3'
miRNA:   3'- -GGAc--GUGGU-CGUGCGCGUCa-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 95764 0.73 0.368417
Target:  5'- cCCUGCACCAgGCGCGCcCGG--GCGGCc -3'
miRNA:   3'- -GGACGUGGU-CGUGCGcGUCagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 106023 0.73 0.376483
Target:  5'- --cGCACguGCGCGUGguGccgCGCGACg -3'
miRNA:   3'- ggaCGUGguCGUGCGCguCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 132770 0.73 0.376483
Target:  5'- --cGCGCUGGCGCGCGCcGagGUGACg -3'
miRNA:   3'- ggaCGUGGUCGUGCGCGuCagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 91731 0.73 0.376483
Target:  5'- gCC-GCACCAGCGCcCGCAG-CGCGuCc -3'
miRNA:   3'- -GGaCGUGGUCGUGcGCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 31233 0.73 0.376483
Target:  5'- gCUGCAgCAGCAUcaGCAgGUCGCGGCu -3'
miRNA:   3'- gGACGUgGUCGUGcgCGU-CAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 68342 0.73 0.384667
Target:  5'- gCCcGUGCCGGaggACgGCGCGGUCGCGAUc -3'
miRNA:   3'- -GGaCGUGGUCg--UG-CGCGUCAGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.