miRNA display CGI


Results 21 - 40 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 4134 0.82 0.10644
Target:  5'- gCgaGCGCCAGCGCGCGCGaccacGUaCGCGACa -3'
miRNA:   3'- -GgaCGUGGUCGUGCGCGU-----CA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 4486 0.74 0.322557
Target:  5'- cUCUGCaucGCCAGCACGUGCA---GCGGCg -3'
miRNA:   3'- -GGACG---UGGUCGUGCGCGUcagCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 4595 0.71 0.48198
Target:  5'- aCUGCGCguGCugGUGCAGgagCGUGu- -3'
miRNA:   3'- gGACGUGguCGugCGCGUCa--GCGCug -5'
25508 3' -58.6 NC_005337.1 + 4755 0.66 0.768646
Target:  5'- --cGCGCCGcGCGCGaGCAG-CGCGuCg -3'
miRNA:   3'- ggaCGUGGU-CGUGCgCGUCaGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 5767 0.66 0.777927
Target:  5'- --gGCGgCAGC-CGCGCGaccacGUaCGCGACg -3'
miRNA:   3'- ggaCGUgGUCGuGCGCGU-----CA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 5818 0.66 0.759246
Target:  5'- uCCcGCGCCGGUccgGCggugugaaGUGCGGcCGCGACc -3'
miRNA:   3'- -GGaCGUGGUCG---UG--------CGCGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 5986 0.66 0.768646
Target:  5'- --cGgGCCAgGCGCGCGC-GUUGCaGACc -3'
miRNA:   3'- ggaCgUGGU-CGUGCGCGuCAGCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 6368 0.67 0.69085
Target:  5'- cCCaGCACCGgcucggcccGCACGCGC--UCGcCGGCg -3'
miRNA:   3'- -GGaCGUGGU---------CGUGCGCGucAGC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 6407 0.68 0.630222
Target:  5'- --cGCGCCAccagacuguGCACGCacaGCAG-CGCGGCc -3'
miRNA:   3'- ggaCGUGGU---------CGUGCG---CGUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 6550 0.66 0.777005
Target:  5'- gUUGCGCCGGaagacuuccgcUACgGCGCagaacccGGUCGCGGCc -3'
miRNA:   3'- gGACGUGGUC-----------GUG-CGCG-------UCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 6566 0.68 0.64037
Target:  5'- --gGaCGCCAGCGCuGCGCGGUC-CGGa -3'
miRNA:   3'- ggaC-GUGGUCGUG-CGCGUCAGcGCUg -5'
25508 3' -58.6 NC_005337.1 + 6627 0.72 0.455111
Target:  5'- --gGCGCCGGCACGcCGCAGgguugaagaccgccgCGCGGu -3'
miRNA:   3'- ggaCGUGGUCGUGC-GCGUCa--------------GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 6874 0.66 0.78708
Target:  5'- -gUGCAgCAGCGUGCGCccguccauGUCGCGcGCg -3'
miRNA:   3'- ggACGUgGUCGUGCGCGu-------CAGCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 6914 0.67 0.700835
Target:  5'- uCC-GCGCCGGCGCGCaGCAucaUCGCcACc -3'
miRNA:   3'- -GGaCGUGGUCGUGCG-CGUc--AGCGcUG- -5'
25508 3' -58.6 NC_005337.1 + 7787 0.68 0.670742
Target:  5'- cUCUGCACCAGCGCcgaGCGCcGUCuCa-- -3'
miRNA:   3'- -GGACGUGGUCGUG---CGCGuCAGcGcug -5'
25508 3' -58.6 NC_005337.1 + 7824 0.66 0.78708
Target:  5'- uCCUccGCGaCAGCGCGCGguGguacaCGCGcACg -3'
miRNA:   3'- -GGA--CGUgGUCGUGCGCguCa----GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 8159 0.74 0.329896
Target:  5'- --cGCGCaCGGCguGCGCGUAGUUGUGGCg -3'
miRNA:   3'- ggaCGUG-GUCG--UGCGCGUCAGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 8241 0.68 0.634282
Target:  5'- aCCgGCGCgCAugagacacacGCACGCGCGGggguugaacgcggcCGCGACg -3'
miRNA:   3'- -GGaCGUG-GU----------CGUGCGCGUCa-------------GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 8551 0.68 0.670742
Target:  5'- gCCUcUACgAGCGUGCGCAGUaCGuCGACg -3'
miRNA:   3'- -GGAcGUGgUCGUGCGCGUCA-GC-GCUG- -5'
25508 3' -58.6 NC_005337.1 + 8712 0.68 0.660638
Target:  5'- aCCUG-GCCAGCACGCuucuGCAcaCGCGcACg -3'
miRNA:   3'- -GGACgUGGUCGUGCG----CGUcaGCGC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.