miRNA display CGI


Results 21 - 40 of 354 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 3' -58.6 NC_005337.1 + 129523 0.66 0.78708
Target:  5'- --cGCGCUgcuCGCGCGCGG-CGCGAg -3'
miRNA:   3'- ggaCGUGGuc-GUGCGCGUCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 37180 0.66 0.78708
Target:  5'- aCUgcgGCACCAGCAUGCGguuGGgcaCGCaGACc -3'
miRNA:   3'- -GGa--CGUGGUCGUGCGCg--UCa--GCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 7824 0.66 0.78708
Target:  5'- uCCUccGCGaCAGCGCGCGguGguacaCGCGcACg -3'
miRNA:   3'- -GGA--CGUgGUCGUGCGCguCa----GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 77637 0.66 0.78708
Target:  5'- aCCUugcGCGCCAGCGugcccgUGCGCgAGgucUCGCaGACg -3'
miRNA:   3'- -GGA---CGUGGUCGU------GCGCG-UC---AGCG-CUG- -5'
25508 3' -58.6 NC_005337.1 + 52520 0.66 0.78708
Target:  5'- gCUGUACCGGCACG-GCA--UGCugGACg -3'
miRNA:   3'- gGACGUGGUCGUGCgCGUcaGCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 80267 0.66 0.781604
Target:  5'- aCgUGCGCguGCGCGaCGCGGUgauccggcucacaaaCGCGuGCg -3'
miRNA:   3'- -GgACGUGguCGUGC-GCGUCA---------------GCGC-UG- -5'
25508 3' -58.6 NC_005337.1 + 98490 0.66 0.781604
Target:  5'- --cGCGCCGGCggcguccgucaugacACGCGCcacgaucccGGUCGCGcCc -3'
miRNA:   3'- ggaCGUGGUCG---------------UGCGCG---------UCAGCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 45321 0.66 0.777927
Target:  5'- aCC-GCGCCcuccGCcucCGCGCGGUcCGCGAg -3'
miRNA:   3'- -GGaCGUGGu---CGu--GCGCGUCA-GCGCUg -5'
25508 3' -58.6 NC_005337.1 + 3866 0.66 0.777927
Target:  5'- gUCUgGCACCGGC-CGCGCAugaGCGuCu -3'
miRNA:   3'- -GGA-CGUGGUCGuGCGCGUcagCGCuG- -5'
25508 3' -58.6 NC_005337.1 + 1323 0.66 0.777927
Target:  5'- -gUGCACguGCACGa--GGcCGCGGCg -3'
miRNA:   3'- ggACGUGguCGUGCgcgUCaGCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 27114 0.66 0.777927
Target:  5'- uCCaGCAgCCgcuuGGcCACGCGCAGcagCGUGACc -3'
miRNA:   3'- -GGaCGU-GG----UC-GUGCGCGUCa--GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 92522 0.66 0.777927
Target:  5'- gCCUGCG-CGGCcgccccauggACGCGguG-CGCGAg -3'
miRNA:   3'- -GGACGUgGUCG----------UGCGCguCaGCGCUg -5'
25508 3' -58.6 NC_005337.1 + 105342 0.66 0.777927
Target:  5'- uCCUGCGCCuGuCGCGCGUgaAGgccUC-CGACu -3'
miRNA:   3'- -GGACGUGGuC-GUGCGCG--UC---AGcGCUG- -5'
25508 3' -58.6 NC_005337.1 + 2350 0.66 0.777927
Target:  5'- uCCgGgGCCAGCGCGCcGCAGcacCGguCGACc -3'
miRNA:   3'- -GGaCgUGGUCGUGCG-CGUCa--GC--GCUG- -5'
25508 3' -58.6 NC_005337.1 + 19537 0.66 0.777927
Target:  5'- gCCggaGCccguCCAGCACGCGCcggacGUCGUaaacGGCg -3'
miRNA:   3'- -GGa--CGu---GGUCGUGCGCGu----CAGCG----CUG- -5'
25508 3' -58.6 NC_005337.1 + 120797 0.66 0.777927
Target:  5'- gCUGgAgCGGCGCGaGaCGGUCuGCGACg -3'
miRNA:   3'- gGACgUgGUCGUGCgC-GUCAG-CGCUG- -5'
25508 3' -58.6 NC_005337.1 + 68958 0.66 0.777927
Target:  5'- --gGCACCGGCGUGCccuucCAGUCGCccGACu -3'
miRNA:   3'- ggaCGUGGUCGUGCGc----GUCAGCG--CUG- -5'
25508 3' -58.6 NC_005337.1 + 19915 0.66 0.777927
Target:  5'- nCUGgACCAGguaggGCGUGUGGUaCGCGAUg -3'
miRNA:   3'- gGACgUGGUCg----UGCGCGUCA-GCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 89863 0.66 0.777927
Target:  5'- gCUGCuucuCCgAGCGCGCGC--UgGCGAUg -3'
miRNA:   3'- gGACGu---GG-UCGUGCGCGucAgCGCUG- -5'
25508 3' -58.6 NC_005337.1 + 83951 0.66 0.777927
Target:  5'- --gGUACCgGGCGgucCGCGCAGggcaGCGGCg -3'
miRNA:   3'- ggaCGUGG-UCGU---GCGCGUCag--CGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.