Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 74164 | 0.72 | 0.612428 |
Target: 5'- aCCGCCGUGcugCgggAGGCGcGCUCGggccgGGAGu -3' miRNA: 3'- -GGCGGCACua-G---UCCGC-CGAGUa----UCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 34897 | 0.72 | 0.612428 |
Target: 5'- gCGCCG--GUCAGGCGGUUgaCGUAGAu -3' miRNA: 3'- gGCGGCacUAGUCCGCCGA--GUAUCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 29904 | 0.73 | 0.569486 |
Target: 5'- aCGCCGUGGUCAGGauGaccuccaugagCAUGGAGa -3' miRNA: 3'- gGCGGCACUAGUCCgcCga---------GUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 119786 | 0.73 | 0.541263 |
Target: 5'- gCCGCgCGUGGUCGGuGCGGUgguggcgagggUgGUGGAGa -3' miRNA: 3'- -GGCG-GCACUAGUC-CGCCG-----------AgUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 84613 | 0.74 | 0.511563 |
Target: 5'- aCGCCGUGGUgcUGGGCGucacGCUCAcGGAGg -3' miRNA: 3'- gGCGGCACUA--GUCCGC----CGAGUaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 99387 | 0.74 | 0.492142 |
Target: 5'- aCCGCC-UGA-CcGGCGcGCUCGUAGAGu -3' miRNA: 3'- -GGCGGcACUaGuCCGC-CGAGUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 64657 | 0.81 | 0.21389 |
Target: 5'- cUCGCCGUGG-CGGuGCGGCUCGUcGAGg -3' miRNA: 3'- -GGCGGCACUaGUC-CGCCGAGUAuCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 130827 | 1.1 | 0.002659 |
Target: 5'- gCCGCCGUGAUCAGGCGGCUCAUAGAGc -3' miRNA: 3'- -GGCGGCACUAGUCCGCCGAGUAUCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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