Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 93326 | 0.67 | 0.881573 |
Target: 5'- gUGCCGgaaGAUC-GGCGGCg---GGAGg -3' miRNA: 3'- gGCGGCa--CUAGuCCGCCGaguaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 65826 | 0.67 | 0.874394 |
Target: 5'- gUGCCGUccuUgAGcGCGGCUCcgAGAGc -3' miRNA: 3'- gGCGGCAcu-AgUC-CGCCGAGuaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 24832 | 0.67 | 0.866995 |
Target: 5'- cUCGCCGUGcUCGaGCGGCgCGUGcucGAGg -3' miRNA: 3'- -GGCGGCACuAGUcCGCCGaGUAU---CUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 71670 | 0.67 | 0.866995 |
Target: 5'- aCGCgCG-GGUgCAcGGCGGCgaCAUAGAGg -3' miRNA: 3'- gGCG-GCaCUA-GU-CCGCCGa-GUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 3453 | 0.67 | 0.859383 |
Target: 5'- gCCGCC-UGAUCAcGGCGGCac-UGGGu -3' miRNA: 3'- -GGCGGcACUAGU-CCGCCGaguAUCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 8083 | 0.67 | 0.859383 |
Target: 5'- gCGuCCGUGGgcacgagcacguUCAGGCGGUUCAcAGu- -3' miRNA: 3'- gGC-GGCACU------------AGUCCGCCGAGUaUCuc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 1976 | 0.67 | 0.849177 |
Target: 5'- gCCGCCGUGcacgccgggucggcGUCAGcuGCGGCUUGUccGGGu -3' miRNA: 3'- -GGCGGCAC--------------UAGUC--CGCCGAGUA--UCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 24757 | 0.68 | 0.809591 |
Target: 5'- gCGCCGcg--CGGGCGGCUCAc---- -3' miRNA: 3'- gGCGGCacuaGUCCGCCGAGUaucuc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 116281 | 0.68 | 0.808707 |
Target: 5'- uCCGCCgGUGAUCgAGGaguaccuCGGCUCccgccccuccAUGGAGc -3' miRNA: 3'- -GGCGG-CACUAG-UCC-------GCCGAG----------UAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 66318 | 0.68 | 0.800676 |
Target: 5'- gCGCCGcGGUCGcgggcuGGCGacacguGCUCGUGGAGc -3' miRNA: 3'- gGCGGCaCUAGU------CCGC------CGAGUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 18662 | 0.68 | 0.800676 |
Target: 5'- gCCGCCGg---CGGGCGGaUCcgAGGGc -3' miRNA: 3'- -GGCGGCacuaGUCCGCCgAGuaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 34427 | 0.68 | 0.800676 |
Target: 5'- aCCGCC-UGG-CGGGCGGCUUGUcGGc -3' miRNA: 3'- -GGCGGcACUaGUCCGCCGAGUAuCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 46126 | 0.69 | 0.791607 |
Target: 5'- gUCGUCcUGGUCGGGCGGCaccaGGAGa -3' miRNA: 3'- -GGCGGcACUAGUCCGCCGaguaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 53650 | 0.69 | 0.776798 |
Target: 5'- gCGCCGUGAUCgccgcgaugcagcgcGucGGCGGCcgCAaGGAGg -3' miRNA: 3'- gGCGGCACUAG---------------U--CCGCCGa-GUaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 59652 | 0.7 | 0.734459 |
Target: 5'- cCCGCCGggGAacaUCAcgucgucGCGGCUCcgGGAGg -3' miRNA: 3'- -GGCGGCa-CU---AGUc------CGCCGAGuaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 129608 | 0.7 | 0.714591 |
Target: 5'- gCGaCCGUGGagcucgUCcGGCGGCUCGUGGc- -3' miRNA: 3'- gGC-GGCACU------AGuCCGCCGAGUAUCuc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 52008 | 0.7 | 0.703537 |
Target: 5'- aCGCCGUGA-CGGaCGGCcgcgcgcgcgcggUCAUGGAGu -3' miRNA: 3'- gGCGGCACUaGUCcGCCG-------------AGUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 94783 | 0.7 | 0.694438 |
Target: 5'- aCCGCCGgucGAUC-GGCGGC--GUAGAc -3' miRNA: 3'- -GGCGGCa--CUAGuCCGCCGagUAUCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 23125 | 0.71 | 0.66076 |
Target: 5'- cCCGCCGUGGUC--GCGGCcaugcgccccuuccUCcgGGAGa -3' miRNA: 3'- -GGCGGCACUAGucCGCCG--------------AGuaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 124316 | 0.71 | 0.643292 |
Target: 5'- uCCGUCGcgGcgCAGGCG-CUCAUGGAc -3' miRNA: 3'- -GGCGGCa-CuaGUCCGCcGAGUAUCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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