miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 5' -55.6 NC_005337.1 + 24757 0.68 0.809591
Target:  5'- gCGCCGcg--CGGGCGGCUCAc---- -3'
miRNA:   3'- gGCGGCacuaGUCCGCCGAGUaucuc -5'
25508 5' -55.6 NC_005337.1 + 1976 0.67 0.849177
Target:  5'- gCCGCCGUGcacgccgggucggcGUCAGcuGCGGCUUGUccGGGu -3'
miRNA:   3'- -GGCGGCAC--------------UAGUC--CGCCGAGUA--UCUc -5'
25508 5' -55.6 NC_005337.1 + 8083 0.67 0.859383
Target:  5'- gCGuCCGUGGgcacgagcacguUCAGGCGGUUCAcAGu- -3'
miRNA:   3'- gGC-GGCACU------------AGUCCGCCGAGUaUCuc -5'
25508 5' -55.6 NC_005337.1 + 3453 0.67 0.859383
Target:  5'- gCCGCC-UGAUCAcGGCGGCac-UGGGu -3'
miRNA:   3'- -GGCGGcACUAGU-CCGCCGaguAUCUc -5'
25508 5' -55.6 NC_005337.1 + 24832 0.67 0.866995
Target:  5'- cUCGCCGUGcUCGaGCGGCgCGUGcucGAGg -3'
miRNA:   3'- -GGCGGCACuAGUcCGCCGaGUAU---CUC- -5'
25508 5' -55.6 NC_005337.1 + 71670 0.67 0.866995
Target:  5'- aCGCgCG-GGUgCAcGGCGGCgaCAUAGAGg -3'
miRNA:   3'- gGCG-GCaCUA-GU-CCGCCGa-GUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 65826 0.67 0.874394
Target:  5'- gUGCCGUccuUgAGcGCGGCUCcgAGAGc -3'
miRNA:   3'- gGCGGCAcu-AgUC-CGCCGAGuaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 59015 0.67 0.881573
Target:  5'- gCGCCGUGcgGUCGuGGCGcccGCUgGUGGAc -3'
miRNA:   3'- gGCGGCAC--UAGU-CCGC---CGAgUAUCUc -5'
25508 5' -55.6 NC_005337.1 + 93326 0.67 0.881573
Target:  5'- gUGCCGgaaGAUC-GGCGGCg---GGAGg -3'
miRNA:   3'- gGCGGCa--CUAGuCCGCCGaguaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 123605 0.67 0.881573
Target:  5'- gCCGCaCGUGccgcgcucgCGGGUGcugacGCUCGUGGAGc -3'
miRNA:   3'- -GGCG-GCACua-------GUCCGC-----CGAGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 102373 0.66 0.888529
Target:  5'- uUCGCCGaGAccaUCAcGGCGGagacCAUGGAGa -3'
miRNA:   3'- -GGCGGCaCU---AGU-CCGCCga--GUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 103344 0.66 0.888529
Target:  5'- cCCGCCcgcugcugGUGGUCGagaacGGCGuGCUCGUgauggacgcGGAGa -3'
miRNA:   3'- -GGCGG--------CACUAGU-----CCGC-CGAGUA---------UCUC- -5'
25508 5' -55.6 NC_005337.1 + 114120 0.66 0.895256
Target:  5'- uCCGCCGcGG-CcuGCGGCagCGUGGAGc -3'
miRNA:   3'- -GGCGGCaCUaGucCGCCGa-GUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 63621 0.66 0.901751
Target:  5'- aCGCCGuUGGUgaaGGGCaGCuugUCGUAGAGc -3'
miRNA:   3'- gGCGGC-ACUAg--UCCGcCG---AGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 50438 0.66 0.901751
Target:  5'- uCCGCCcggGAuUCGGGCGGCgCGUGu-- -3'
miRNA:   3'- -GGCGGca-CU-AGUCCGCCGaGUAUcuc -5'
25508 5' -55.6 NC_005337.1 + 74215 0.66 0.901751
Target:  5'- uCCGCCGUGcUUGcGGCGGaugaUCG-GGAGg -3'
miRNA:   3'- -GGCGGCACuAGU-CCGCCg---AGUaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 65150 0.66 0.901751
Target:  5'- gCCGCCGUGGaCc-GCGGCUCGc---- -3'
miRNA:   3'- -GGCGGCACUaGucCGCCGAGUaucuc -5'
25508 5' -55.6 NC_005337.1 + 114526 0.66 0.905535
Target:  5'- aCGCCGUGuUCAcGGacgagaugauggaGGCcaUCGUGGAGg -3'
miRNA:   3'- gGCGGCACuAGU-CCg------------CCG--AGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 94244 0.66 0.90801
Target:  5'- aUGUCGgucUGGuUCAGGC-GCUCGUAGGGc -3'
miRNA:   3'- gGCGGC---ACU-AGUCCGcCGAGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 63305 0.66 0.90801
Target:  5'- cCCGCUcagcaccgaGUGcagCAGGCGcuuGCUCGUGGAc -3'
miRNA:   3'- -GGCGG---------CACua-GUCCGC---CGAGUAUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.