Results 1 - 20 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 130827 | 1.1 | 0.002659 |
Target: 5'- gCCGCCGUGAUCAGGCGGCUCAUAGAGc -3' miRNA: 3'- -GGCGGCACUAGUCCGCCGAGUAUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 64657 | 0.81 | 0.21389 |
Target: 5'- cUCGCCGUGG-CGGuGCGGCUCGUcGAGg -3' miRNA: 3'- -GGCGGCACUaGUC-CGCCGAGUAuCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 99387 | 0.74 | 0.492142 |
Target: 5'- aCCGCC-UGA-CcGGCGcGCUCGUAGAGu -3' miRNA: 3'- -GGCGGcACUaGuCCGC-CGAGUAUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 84613 | 0.74 | 0.511563 |
Target: 5'- aCGCCGUGGUgcUGGGCGucacGCUCAcGGAGg -3' miRNA: 3'- gGCGGCACUA--GUCCGC----CGAGUaUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 119786 | 0.73 | 0.541263 |
Target: 5'- gCCGCgCGUGGUCGGuGCGGUgguggcgagggUgGUGGAGa -3' miRNA: 3'- -GGCG-GCACUAGUC-CGCCG-----------AgUAUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 29904 | 0.73 | 0.569486 |
Target: 5'- aCGCCGUGGUCAGGauGaccuccaugagCAUGGAGa -3' miRNA: 3'- gGCGGCACUAGUCCgcCga---------GUAUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 34897 | 0.72 | 0.612428 |
Target: 5'- gCGCCG--GUCAGGCGGUUgaCGUAGAu -3' miRNA: 3'- gGCGGCacUAGUCCGCCGA--GUAUCUc -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 74164 | 0.72 | 0.612428 |
Target: 5'- aCCGCCGUGcugCgggAGGCGcGCUCGggccgGGAGu -3' miRNA: 3'- -GGCGGCACua-G---UCCGC-CGAGUa----UCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 124316 | 0.71 | 0.643292 |
Target: 5'- uCCGUCGcgGcgCAGGCG-CUCAUGGAc -3' miRNA: 3'- -GGCGGCa-CuaGUCCGCcGAGUAUCUc -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 23125 | 0.71 | 0.66076 |
Target: 5'- cCCGCCGUGGUC--GCGGCcaugcgccccuuccUCcgGGAGa -3' miRNA: 3'- -GGCGGCACUAGucCGCCG--------------AGuaUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 94783 | 0.7 | 0.694438 |
Target: 5'- aCCGCCGgucGAUC-GGCGGC--GUAGAc -3' miRNA: 3'- -GGCGGCa--CUAGuCCGCCGagUAUCUc -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 52008 | 0.7 | 0.703537 |
Target: 5'- aCGCCGUGA-CGGaCGGCcgcgcgcgcgcggUCAUGGAGu -3' miRNA: 3'- gGCGGCACUaGUCcGCCG-------------AGUAUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 129608 | 0.7 | 0.714591 |
Target: 5'- gCGaCCGUGGagcucgUCcGGCGGCUCGUGGc- -3' miRNA: 3'- gGC-GGCACU------AGuCCGCCGAGUAUCuc -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 59652 | 0.7 | 0.734459 |
Target: 5'- cCCGCCGggGAacaUCAcgucgucGCGGCUCcgGGAGg -3' miRNA: 3'- -GGCGGCa-CU---AGUc------CGCCGAGuaUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 53650 | 0.69 | 0.776798 |
Target: 5'- gCGCCGUGAUCgccgcgaugcagcgcGucGGCGGCcgCAaGGAGg -3' miRNA: 3'- gGCGGCACUAG---------------U--CCGCCGa-GUaUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 46126 | 0.69 | 0.791607 |
Target: 5'- gUCGUCcUGGUCGGGCGGCaccaGGAGa -3' miRNA: 3'- -GGCGGcACUAGUCCGCCGaguaUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 66318 | 0.68 | 0.800676 |
Target: 5'- gCGCCGcGGUCGcgggcuGGCGacacguGCUCGUGGAGc -3' miRNA: 3'- gGCGGCaCUAGU------CCGC------CGAGUAUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 34427 | 0.68 | 0.800676 |
Target: 5'- aCCGCC-UGG-CGGGCGGCUUGUcGGc -3' miRNA: 3'- -GGCGGcACUaGUCCGCCGAGUAuCUc -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 18662 | 0.68 | 0.800676 |
Target: 5'- gCCGCCGg---CGGGCGGaUCcgAGGGc -3' miRNA: 3'- -GGCGGCacuaGUCCGCCgAGuaUCUC- -5' |
|||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 116281 | 0.68 | 0.808707 |
Target: 5'- uCCGCCgGUGAUCgAGGaguaccuCGGCUCccgccccuccAUGGAGc -3' miRNA: 3'- -GGCGG-CACUAG-UCC-------GCCGAG----------UAUCUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home