Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 1976 | 0.67 | 0.849177 |
Target: 5'- gCCGCCGUGcacgccgggucggcGUCAGcuGCGGCUUGUccGGGu -3' miRNA: 3'- -GGCGGCAC--------------UAGUC--CGCCGAGUA--UCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 3453 | 0.67 | 0.859383 |
Target: 5'- gCCGCC-UGAUCAcGGCGGCac-UGGGu -3' miRNA: 3'- -GGCGGcACUAGU-CCGCCGaguAUCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 7048 | 0.66 | 0.919812 |
Target: 5'- aCGUCG-GggCGGGCGGCgggguugcgcgCGUAGAc -3' miRNA: 3'- gGCGGCaCuaGUCCGCCGa----------GUAUCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 8083 | 0.67 | 0.859383 |
Target: 5'- gCGuCCGUGGgcacgagcacguUCAGGCGGUUCAcAGu- -3' miRNA: 3'- gGC-GGCACU------------AGUCCGCCGAGUaUCuc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 18662 | 0.68 | 0.800676 |
Target: 5'- gCCGCCGg---CGGGCGGaUCcgAGGGc -3' miRNA: 3'- -GGCGGCacuaGUCCGCCgAGuaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 23125 | 0.71 | 0.66076 |
Target: 5'- cCCGCCGUGGUC--GCGGCcaugcgccccuuccUCcgGGAGa -3' miRNA: 3'- -GGCGGCACUAGucCGCCG--------------AGuaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 24757 | 0.68 | 0.809591 |
Target: 5'- gCGCCGcg--CGGGCGGCUCAc---- -3' miRNA: 3'- gGCGGCacuaGUCCGCCGAGUaucuc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 24832 | 0.67 | 0.866995 |
Target: 5'- cUCGCCGUGcUCGaGCGGCgCGUGcucGAGg -3' miRNA: 3'- -GGCGGCACuAGUcCGCCGaGUAU---CUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 25060 | 0.66 | 0.919812 |
Target: 5'- gCGCCGUG--CGGGCGGCguUCGUcaAGc -3' miRNA: 3'- gGCGGCACuaGUCCGCCG--AGUAucUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 29904 | 0.73 | 0.569486 |
Target: 5'- aCGCCGUGGUCAGGauGaccuccaugagCAUGGAGa -3' miRNA: 3'- gGCGGCACUAGUCCgcCga---------GUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 34427 | 0.68 | 0.800676 |
Target: 5'- aCCGCC-UGG-CGGGCGGCUUGUcGGc -3' miRNA: 3'- -GGCGGcACUaGUCCGCCGAGUAuCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 34897 | 0.72 | 0.612428 |
Target: 5'- gCGCCG--GUCAGGCGGUUgaCGUAGAu -3' miRNA: 3'- gGCGGCacUAGUCCGCCGA--GUAUCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 46126 | 0.69 | 0.791607 |
Target: 5'- gUCGUCcUGGUCGGGCGGCaccaGGAGa -3' miRNA: 3'- -GGCGGcACUAGUCCGCCGaguaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 50438 | 0.66 | 0.901751 |
Target: 5'- uCCGCCcggGAuUCGGGCGGCgCGUGu-- -3' miRNA: 3'- -GGCGGca-CU-AGUCCGCCGaGUAUcuc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 52008 | 0.7 | 0.703537 |
Target: 5'- aCGCCGUGA-CGGaCGGCcgcgcgcgcgcggUCAUGGAGu -3' miRNA: 3'- gGCGGCACUaGUCcGCCG-------------AGUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 53650 | 0.69 | 0.776798 |
Target: 5'- gCGCCGUGAUCgccgcgaugcagcgcGucGGCGGCcgCAaGGAGg -3' miRNA: 3'- gGCGGCACUAG---------------U--CCGCCGa-GUaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 58222 | 0.66 | 0.914031 |
Target: 5'- aCCGCCGcg--C-GGCGG-UCAUGGAGc -3' miRNA: 3'- -GGCGGCacuaGuCCGCCgAGUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 59015 | 0.67 | 0.881573 |
Target: 5'- gCGCCGUGcgGUCGuGGCGcccGCUgGUGGAc -3' miRNA: 3'- gGCGGCAC--UAGU-CCGC---CGAgUAUCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 59652 | 0.7 | 0.734459 |
Target: 5'- cCCGCCGggGAacaUCAcgucgucGCGGCUCcgGGAGg -3' miRNA: 3'- -GGCGGCa-CU---AGUc------CGCCGAGuaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 63305 | 0.66 | 0.90801 |
Target: 5'- cCCGCUcagcaccgaGUGcagCAGGCGcuuGCUCGUGGAc -3' miRNA: 3'- -GGCGG---------CACua-GUCCGC---CGAGUAUCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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