Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25508 | 5' | -55.6 | NC_005337.1 | + | 63621 | 0.66 | 0.901751 |
Target: 5'- aCGCCGuUGGUgaaGGGCaGCuugUCGUAGAGc -3' miRNA: 3'- gGCGGC-ACUAg--UCCGcCG---AGUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 64657 | 0.81 | 0.21389 |
Target: 5'- cUCGCCGUGG-CGGuGCGGCUCGUcGAGg -3' miRNA: 3'- -GGCGGCACUaGUC-CGCCGAGUAuCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 65150 | 0.66 | 0.901751 |
Target: 5'- gCCGCCGUGGaCc-GCGGCUCGc---- -3' miRNA: 3'- -GGCGGCACUaGucCGCCGAGUaucuc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 65826 | 0.67 | 0.874394 |
Target: 5'- gUGCCGUccuUgAGcGCGGCUCcgAGAGc -3' miRNA: 3'- gGCGGCAcu-AgUC-CGCCGAGuaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 66318 | 0.68 | 0.800676 |
Target: 5'- gCGCCGcGGUCGcgggcuGGCGacacguGCUCGUGGAGc -3' miRNA: 3'- gGCGGCaCUAGU------CCGC------CGAGUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 71670 | 0.67 | 0.866995 |
Target: 5'- aCGCgCG-GGUgCAcGGCGGCgaCAUAGAGg -3' miRNA: 3'- gGCG-GCaCUA-GU-CCGCCGa-GUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 74164 | 0.72 | 0.612428 |
Target: 5'- aCCGCCGUGcugCgggAGGCGcGCUCGggccgGGAGu -3' miRNA: 3'- -GGCGGCACua-G---UCCGC-CGAGUa----UCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 74215 | 0.66 | 0.901751 |
Target: 5'- uCCGCCGUGcUUGcGGCGGaugaUCG-GGAGg -3' miRNA: 3'- -GGCGGCACuAGU-CCGCCg---AGUaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 81815 | 0.66 | 0.919812 |
Target: 5'- gCGCCGcGGcUCAGcGCGGacaggggUCGUAGAGc -3' miRNA: 3'- gGCGGCaCU-AGUC-CGCCg------AGUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 84613 | 0.74 | 0.511563 |
Target: 5'- aCGCCGUGGUgcUGGGCGucacGCUCAcGGAGg -3' miRNA: 3'- gGCGGCACUA--GUCCGC----CGAGUaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 93288 | 0.66 | 0.919812 |
Target: 5'- gCCGCCGUGG-CAGaGCGGgacugCGUGGc- -3' miRNA: 3'- -GGCGGCACUaGUC-CGCCga---GUAUCuc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 93326 | 0.67 | 0.881573 |
Target: 5'- gUGCCGgaaGAUC-GGCGGCg---GGAGg -3' miRNA: 3'- gGCGGCa--CUAGuCCGCCGaguaUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 94244 | 0.66 | 0.90801 |
Target: 5'- aUGUCGgucUGGuUCAGGC-GCUCGUAGGGc -3' miRNA: 3'- gGCGGC---ACU-AGUCCGcCGAGUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 94783 | 0.7 | 0.694438 |
Target: 5'- aCCGCCGgucGAUC-GGCGGC--GUAGAc -3' miRNA: 3'- -GGCGGCa--CUAGuCCGCCGagUAUCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 99387 | 0.74 | 0.492142 |
Target: 5'- aCCGCC-UGA-CcGGCGcGCUCGUAGAGu -3' miRNA: 3'- -GGCGGcACUaGuCCGC-CGAGUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 102373 | 0.66 | 0.888529 |
Target: 5'- uUCGCCGaGAccaUCAcGGCGGagacCAUGGAGa -3' miRNA: 3'- -GGCGGCaCU---AGU-CCGCCga--GUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 103344 | 0.66 | 0.888529 |
Target: 5'- cCCGCCcgcugcugGUGGUCGagaacGGCGuGCUCGUgauggacgcGGAGa -3' miRNA: 3'- -GGCGG--------CACUAGU-----CCGC-CGAGUA---------UCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 111538 | 0.66 | 0.919812 |
Target: 5'- uCCGCCGcgugcaGGUCGGGguCGGCggugcCGUAGAc -3' miRNA: 3'- -GGCGGCa-----CUAGUCC--GCCGa----GUAUCUc -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 114120 | 0.66 | 0.895256 |
Target: 5'- uCCGCCGcGG-CcuGCGGCagCGUGGAGc -3' miRNA: 3'- -GGCGGCaCUaGucCGCCGa-GUAUCUC- -5' |
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25508 | 5' | -55.6 | NC_005337.1 | + | 114526 | 0.66 | 0.905535 |
Target: 5'- aCGCCGUGuUCAcGGacgagaugauggaGGCcaUCGUGGAGg -3' miRNA: 3'- gGCGGCACuAGU-CCg------------CCG--AGUAUCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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