miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 5' -55.6 NC_005337.1 + 130827 1.1 0.002659
Target:  5'- gCCGCCGUGAUCAGGCGGCUCAUAGAGc -3'
miRNA:   3'- -GGCGGCACUAGUCCGCCGAGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 129608 0.7 0.714591
Target:  5'- gCGaCCGUGGagcucgUCcGGCGGCUCGUGGc- -3'
miRNA:   3'- gGC-GGCACU------AGuCCGCCGAGUAUCuc -5'
25508 5' -55.6 NC_005337.1 + 126540 0.66 0.919812
Target:  5'- cUCGCCG-GAUCcGGCuaccGGCUCAccgguagcggAGAGg -3'
miRNA:   3'- -GGCGGCaCUAGuCCG----CCGAGUa---------UCUC- -5'
25508 5' -55.6 NC_005337.1 + 124316 0.71 0.643292
Target:  5'- uCCGUCGcgGcgCAGGCG-CUCAUGGAc -3'
miRNA:   3'- -GGCGGCa-CuaGUCCGCcGAGUAUCUc -5'
25508 5' -55.6 NC_005337.1 + 123605 0.67 0.881573
Target:  5'- gCCGCaCGUGccgcgcucgCGGGUGcugacGCUCGUGGAGc -3'
miRNA:   3'- -GGCG-GCACua-------GUCCGC-----CGAGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 119786 0.73 0.541263
Target:  5'- gCCGCgCGUGGUCGGuGCGGUgguggcgagggUgGUGGAGa -3'
miRNA:   3'- -GGCG-GCACUAGUC-CGCCG-----------AgUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 117643 0.66 0.914031
Target:  5'- aCCGCCGUGGUgGaGC-GCUCGaAGAa -3'
miRNA:   3'- -GGCGGCACUAgUcCGcCGAGUaUCUc -5'
25508 5' -55.6 NC_005337.1 + 116281 0.68 0.808707
Target:  5'- uCCGCCgGUGAUCgAGGaguaccuCGGCUCccgccccuccAUGGAGc -3'
miRNA:   3'- -GGCGG-CACUAG-UCC-------GCCGAG----------UAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 114526 0.66 0.905535
Target:  5'- aCGCCGUGuUCAcGGacgagaugauggaGGCcaUCGUGGAGg -3'
miRNA:   3'- gGCGGCACuAGU-CCg------------CCG--AGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 114120 0.66 0.895256
Target:  5'- uCCGCCGcGG-CcuGCGGCagCGUGGAGc -3'
miRNA:   3'- -GGCGGCaCUaGucCGCCGa-GUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 111538 0.66 0.919812
Target:  5'- uCCGCCGcgugcaGGUCGGGguCGGCggugcCGUAGAc -3'
miRNA:   3'- -GGCGGCa-----CUAGUCC--GCCGa----GUAUCUc -5'
25508 5' -55.6 NC_005337.1 + 103344 0.66 0.888529
Target:  5'- cCCGCCcgcugcugGUGGUCGagaacGGCGuGCUCGUgauggacgcGGAGa -3'
miRNA:   3'- -GGCGG--------CACUAGU-----CCGC-CGAGUA---------UCUC- -5'
25508 5' -55.6 NC_005337.1 + 102373 0.66 0.888529
Target:  5'- uUCGCCGaGAccaUCAcGGCGGagacCAUGGAGa -3'
miRNA:   3'- -GGCGGCaCU---AGU-CCGCCga--GUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 99387 0.74 0.492142
Target:  5'- aCCGCC-UGA-CcGGCGcGCUCGUAGAGu -3'
miRNA:   3'- -GGCGGcACUaGuCCGC-CGAGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 94783 0.7 0.694438
Target:  5'- aCCGCCGgucGAUC-GGCGGC--GUAGAc -3'
miRNA:   3'- -GGCGGCa--CUAGuCCGCCGagUAUCUc -5'
25508 5' -55.6 NC_005337.1 + 94244 0.66 0.90801
Target:  5'- aUGUCGgucUGGuUCAGGC-GCUCGUAGGGc -3'
miRNA:   3'- gGCGGC---ACU-AGUCCGcCGAGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 93326 0.67 0.881573
Target:  5'- gUGCCGgaaGAUC-GGCGGCg---GGAGg -3'
miRNA:   3'- gGCGGCa--CUAGuCCGCCGaguaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 93288 0.66 0.919812
Target:  5'- gCCGCCGUGG-CAGaGCGGgacugCGUGGc- -3'
miRNA:   3'- -GGCGGCACUaGUC-CGCCga---GUAUCuc -5'
25508 5' -55.6 NC_005337.1 + 84613 0.74 0.511563
Target:  5'- aCGCCGUGGUgcUGGGCGucacGCUCAcGGAGg -3'
miRNA:   3'- gGCGGCACUA--GUCCGC----CGAGUaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 81815 0.66 0.919812
Target:  5'- gCGCCGcGGcUCAGcGCGGacaggggUCGUAGAGc -3'
miRNA:   3'- gGCGGCaCU-AGUC-CGCCg------AGUAUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.