miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25508 5' -55.6 NC_005337.1 + 64657 0.81 0.21389
Target:  5'- cUCGCCGUGG-CGGuGCGGCUCGUcGAGg -3'
miRNA:   3'- -GGCGGCACUaGUC-CGCCGAGUAuCUC- -5'
25508 5' -55.6 NC_005337.1 + 123605 0.67 0.881573
Target:  5'- gCCGCaCGUGccgcgcucgCGGGUGcugacGCUCGUGGAGc -3'
miRNA:   3'- -GGCG-GCACua-------GUCCGC-----CGAGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 103344 0.66 0.888529
Target:  5'- cCCGCCcgcugcugGUGGUCGagaacGGCGuGCUCGUgauggacgcGGAGa -3'
miRNA:   3'- -GGCGG--------CACUAGU-----CCGC-CGAGUA---------UCUC- -5'
25508 5' -55.6 NC_005337.1 + 50438 0.66 0.901751
Target:  5'- uCCGCCcggGAuUCGGGCGGCgCGUGu-- -3'
miRNA:   3'- -GGCGGca-CU-AGUCCGCCGaGUAUcuc -5'
25508 5' -55.6 NC_005337.1 + 65150 0.66 0.901751
Target:  5'- gCCGCCGUGGaCc-GCGGCUCGc---- -3'
miRNA:   3'- -GGCGGCACUaGucCGCCGAGUaucuc -5'
25508 5' -55.6 NC_005337.1 + 74215 0.66 0.901751
Target:  5'- uCCGCCGUGcUUGcGGCGGaugaUCG-GGAGg -3'
miRNA:   3'- -GGCGGCACuAGU-CCGCCg---AGUaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 94244 0.66 0.90801
Target:  5'- aUGUCGgucUGGuUCAGGC-GCUCGUAGGGc -3'
miRNA:   3'- gGCGGC---ACU-AGUCCGcCGAGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 81815 0.66 0.919812
Target:  5'- gCGCCGcGGcUCAGcGCGGacaggggUCGUAGAGc -3'
miRNA:   3'- gGCGGCaCU-AGUC-CGCCg------AGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 7048 0.66 0.919812
Target:  5'- aCGUCG-GggCGGGCGGCgggguugcgcgCGUAGAc -3'
miRNA:   3'- gGCGGCaCuaGUCCGCCGa----------GUAUCUc -5'
25508 5' -55.6 NC_005337.1 + 93326 0.67 0.881573
Target:  5'- gUGCCGgaaGAUC-GGCGGCg---GGAGg -3'
miRNA:   3'- gGCGGCa--CUAGuCCGCCGaguaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 59015 0.67 0.881573
Target:  5'- gCGCCGUGcgGUCGuGGCGcccGCUgGUGGAc -3'
miRNA:   3'- gGCGGCAC--UAGU-CCGC---CGAgUAUCUc -5'
25508 5' -55.6 NC_005337.1 + 71670 0.67 0.866995
Target:  5'- aCGCgCG-GGUgCAcGGCGGCgaCAUAGAGg -3'
miRNA:   3'- gGCG-GCaCUA-GU-CCGCCGa-GUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 34897 0.72 0.612428
Target:  5'- gCGCCG--GUCAGGCGGUUgaCGUAGAu -3'
miRNA:   3'- gGCGGCacUAGUCCGCCGA--GUAUCUc -5'
25508 5' -55.6 NC_005337.1 + 74164 0.72 0.612428
Target:  5'- aCCGCCGUGcugCgggAGGCGcGCUCGggccgGGAGu -3'
miRNA:   3'- -GGCGGCACua-G---UCCGC-CGAGUa----UCUC- -5'
25508 5' -55.6 NC_005337.1 + 23125 0.71 0.66076
Target:  5'- cCCGCCGUGGUC--GCGGCcaugcgccccuuccUCcgGGAGa -3'
miRNA:   3'- -GGCGGCACUAGucCGCCG--------------AGuaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 52008 0.7 0.703537
Target:  5'- aCGCCGUGA-CGGaCGGCcgcgcgcgcgcggUCAUGGAGu -3'
miRNA:   3'- gGCGGCACUaGUCcGCCG-------------AGUAUCUC- -5'
25508 5' -55.6 NC_005337.1 + 129608 0.7 0.714591
Target:  5'- gCGaCCGUGGagcucgUCcGGCGGCUCGUGGc- -3'
miRNA:   3'- gGC-GGCACU------AGuCCGCCGAGUAUCuc -5'
25508 5' -55.6 NC_005337.1 + 53650 0.69 0.776798
Target:  5'- gCGCCGUGAUCgccgcgaugcagcgcGucGGCGGCcgCAaGGAGg -3'
miRNA:   3'- gGCGGCACUAG---------------U--CCGCCGa-GUaUCUC- -5'
25508 5' -55.6 NC_005337.1 + 34427 0.68 0.800676
Target:  5'- aCCGCC-UGG-CGGGCGGCUUGUcGGc -3'
miRNA:   3'- -GGCGGcACUaGUCCGCCGAGUAuCUc -5'
25508 5' -55.6 NC_005337.1 + 3453 0.67 0.859383
Target:  5'- gCCGCC-UGAUCAcGGCGGCac-UGGGu -3'
miRNA:   3'- -GGCGGcACUAGU-CCGCCGaguAUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.