Results 61 - 80 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 122198 | 0.68 | 0.737423 |
Target: 5'- gCCUCAucgccgcGGGCGCggacgugUcgGCGCGcacGCCGGa -3' miRNA: 3'- aGGAGU-------UCUGCGa------GuaCGCGC---CGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 46008 | 0.68 | 0.728664 |
Target: 5'- gUCCUCcgcGGCGCccgCcgGCGCG-CCGGc -3' miRNA: 3'- -AGGAGuu-CUGCGa--GuaCGCGCcGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 130729 | 0.68 | 0.728664 |
Target: 5'- cUCgUCGAG-CGCUCGUG-GCcGCUGGg -3' miRNA: 3'- -AGgAGUUCuGCGAGUACgCGcCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 131313 | 0.68 | 0.718855 |
Target: 5'- gCCgagugCGAGgcggagaccGCGCUCAUGCGC-GCCGu -3' miRNA: 3'- aGGa----GUUC---------UGCGAGUACGCGcCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 35427 | 0.68 | 0.718855 |
Target: 5'- -gCUCGauGGACGCgCAcgGCGCGGUgGGc -3' miRNA: 3'- agGAGU--UCUGCGaGUa-CGCGCCGgCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 19996 | 0.68 | 0.718855 |
Target: 5'- gUCCUC-GGGCaGCaCGUGCuGCGGgCGGa -3' miRNA: 3'- -AGGAGuUCUG-CGaGUACG-CGCCgGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 91533 | 0.68 | 0.718855 |
Target: 5'- aCCcgCAccgcACGCUCG-GCGCGGCCGu -3' miRNA: 3'- aGGa-GUuc--UGCGAGUaCGCGCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 36113 | 0.68 | 0.718855 |
Target: 5'- uUCaUCAAGuGCGCaggcacccugUCGUGCGCGGCgugCGGg -3' miRNA: 3'- -AGgAGUUC-UGCG----------AGUACGCGCCG---GCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 70789 | 0.68 | 0.718855 |
Target: 5'- -aCUC-GGAgGC-CAUGCgGCGGCUGGu -3' miRNA: 3'- agGAGuUCUgCGaGUACG-CGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 102995 | 0.68 | 0.718855 |
Target: 5'- cCCUC-GGACGUgccCGaGCGCGGCCc- -3' miRNA: 3'- aGGAGuUCUGCGa--GUaCGCGCCGGcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 58108 | 0.68 | 0.708972 |
Target: 5'- uUCUUCAgcaAGACGC-CggGCGUGGggaCCGGg -3' miRNA: 3'- -AGGAGU---UCUGCGaGuaCGCGCC---GGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 23116 | 0.68 | 0.708972 |
Target: 5'- cUCUUCcGGACGCUgGUGCGCcGCUu- -3' miRNA: 3'- -AGGAGuUCUGCGAgUACGCGcCGGcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 128630 | 0.69 | 0.699025 |
Target: 5'- cCCUCGguuucccugcuGGAUa-UCcUGCGCGGCCGGu -3' miRNA: 3'- aGGAGU-----------UCUGcgAGuACGCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 45401 | 0.69 | 0.699025 |
Target: 5'- cCCggugcuGACGCUCcacUGCGCGGCguCGGa -3' miRNA: 3'- aGGaguu--CUGCGAGu--ACGCGCCG--GCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 42535 | 0.69 | 0.698027 |
Target: 5'- uUCC-CGccggacgcgcugcGGGCGCUgGUGCggcuGCGGCUGGa -3' miRNA: 3'- -AGGaGU-------------UCUGCGAgUACG----CGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 67447 | 0.69 | 0.678974 |
Target: 5'- aCUUCGAGACGgugaUCcgGCGCaGCCGc -3' miRNA: 3'- aGGAGUUCUGCg---AGuaCGCGcCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 36424 | 0.69 | 0.678974 |
Target: 5'- gUCCUCGc-GCGcCUCAcccggcugcagcUGCGCGGgCGGa -3' miRNA: 3'- -AGGAGUucUGC-GAGU------------ACGCGCCgGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 130950 | 0.69 | 0.678974 |
Target: 5'- uUCCU--GGACGC-CG-GCGUGGCCGu -3' miRNA: 3'- -AGGAguUCUGCGaGUaCGCGCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 89932 | 0.69 | 0.668887 |
Target: 5'- cUCCUCAcagaGGGcCGCgCGgauaaagGCGCGGCCGc -3' miRNA: 3'- -AGGAGU----UCU-GCGaGUa------CGCGCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 101502 | 0.69 | 0.668887 |
Target: 5'- -gCUCAugcgcgaGCGCUCc-GCGCGGCUGGa -3' miRNA: 3'- agGAGUuc-----UGCGAGuaCGCGCCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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