Results 41 - 60 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 94554 | 0.67 | 0.79453 |
Target: 5'- cUCCgagUCGAuGCGCUUGauggGCGCGGCCa- -3' miRNA: 3'- -AGG---AGUUcUGCGAGUa---CGCGCCGGcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 23043 | 0.67 | 0.785484 |
Target: 5'- gUCCUCGuucguGACGCaCGccGCGCG-CCGGa -3' miRNA: 3'- -AGGAGUu----CUGCGaGUa-CGCGCcGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 2865 | 0.67 | 0.785484 |
Target: 5'- gCCgaucGGCGcCUCAccaGCGUGGCCGGc -3' miRNA: 3'- aGGaguuCUGC-GAGUa--CGCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 85379 | 0.67 | 0.785484 |
Target: 5'- gUCCgagaugCAcuGGAUGC-CGUGCGCGGCg-- -3' miRNA: 3'- -AGGa-----GU--UCUGCGaGUACGCGCCGgcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 44703 | 0.67 | 0.785484 |
Target: 5'- uUCCgguGGuguGCUCGacGUGCGGCCGGg -3' miRNA: 3'- -AGGaguUCug-CGAGUa-CGCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 44464 | 0.67 | 0.785484 |
Target: 5'- gCCUCGccgagcuggAGGCcaGUUCGagGCGCGGCCGc -3' miRNA: 3'- aGGAGU---------UCUG--CGAGUa-CGCGCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 3363 | 0.67 | 0.776301 |
Target: 5'- aCCgcuugCAGGAgGU--GUGCGCGGCCa- -3' miRNA: 3'- aGGa----GUUCUgCGagUACGCGCCGGcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 64894 | 0.67 | 0.776301 |
Target: 5'- gCCUCAcagAGGCGgaCcugGCGCuagcGGCCGGc -3' miRNA: 3'- aGGAGU---UCUGCgaGua-CGCG----CCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 113615 | 0.67 | 0.776301 |
Target: 5'- cCCUCuGGuccGCGC-CGUGCGaGGCCGa -3' miRNA: 3'- aGGAGuUC---UGCGaGUACGCgCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 44625 | 0.67 | 0.766992 |
Target: 5'- aCCUgAAGGCGCugcuccugaUCGUGCGCcGCagCGGg -3' miRNA: 3'- aGGAgUUCUGCG---------AGUACGCGcCG--GCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 107104 | 0.67 | 0.766992 |
Target: 5'- gCCUCAAGACGUcgUCuucGaCGCGGCgGu -3' miRNA: 3'- aGGAGUUCUGCG--AGua-C-GCGCCGgCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 43154 | 0.67 | 0.766992 |
Target: 5'- -gCUCuccAUGCUCAUGCGCGccgaCCGGa -3' miRNA: 3'- agGAGuucUGCGAGUACGCGCc---GGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 126919 | 0.67 | 0.766992 |
Target: 5'- aUCgUCGAGACGCUgCuggagGCG-GGCgCGGa -3' miRNA: 3'- -AGgAGUUCUGCGA-Gua---CGCgCCG-GCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 120601 | 0.68 | 0.757565 |
Target: 5'- gCCUC---GCGCUCAUG-GaggaGGCCGGc -3' miRNA: 3'- aGGAGuucUGCGAGUACgCg---CCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 49170 | 0.68 | 0.748029 |
Target: 5'- gCgUCAagaacgugcAGACGCUCGUGCgguacGUGGCCa- -3' miRNA: 3'- aGgAGU---------UCUGCGAGUACG-----CGCCGGcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 129876 | 0.68 | 0.748029 |
Target: 5'- cCCUCGAuacggcaucucGcCGCUgcaCAUG-GCGGCCGGg -3' miRNA: 3'- aGGAGUU-----------CuGCGA---GUACgCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 74902 | 0.68 | 0.748029 |
Target: 5'- gCCg-GGGGCGUgaugGCGCGGCUGGc -3' miRNA: 3'- aGGagUUCUGCGaguaCGCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 88554 | 0.68 | 0.738392 |
Target: 5'- aUCCUCAucgccACGCUg--GCG-GGCCGGg -3' miRNA: 3'- -AGGAGUuc---UGCGAguaCGCgCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 93636 | 0.68 | 0.738392 |
Target: 5'- gUCUUCAuGAaGUUCAgcaaGuCGCGGCCGGc -3' miRNA: 3'- -AGGAGUuCUgCGAGUa---C-GCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 28873 | 0.68 | 0.738392 |
Target: 5'- gUCCaaCAAGACGgaCGUGCagacgugcaacCGGCCGGg -3' miRNA: 3'- -AGGa-GUUCUGCgaGUACGc----------GCCGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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