miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 76222 0.66 0.828355
Target:  5'- gUCCUCGGGGuuggcgagcacgcCGC-CGUcgaagaGCGCGGCCuGGc -3'
miRNA:   3'- -AGGAGUUCU-------------GCGaGUA------CGCGCCGG-CC- -5'
25509 5' -57.5 NC_005337.1 + 519 0.66 0.82077
Target:  5'- cUCCUCGcggcgcAGGCGCUCca--GCuGCCGGc -3'
miRNA:   3'- -AGGAGU------UCUGCGAGuacgCGcCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 11390 0.66 0.82077
Target:  5'- gCCg-AAGuCGUUCAgcgugcGCGCGGCCGa -3'
miRNA:   3'- aGGagUUCuGCGAGUa-----CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 519 0.66 0.82077
Target:  5'- cUCCUCGcggcgcAGGCGCUCca--GCuGCCGGc -3'
miRNA:   3'- -AGGAGU------UCUGCGAGuacgCGcCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 68224 0.66 0.82077
Target:  5'- gCCUgAcGGCGUcCGgguuccggaGCGCGGCCGGc -3'
miRNA:   3'- aGGAgUuCUGCGaGUa--------CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 96124 0.66 0.82077
Target:  5'- gCCgcgCAGGAUGC-----CGCGGCCGGu -3'
miRNA:   3'- aGGa--GUUCUGCGaguacGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 93864 0.66 0.82077
Target:  5'- gCCUgCAcGA-GCUCAUGUggcggaugaaGCGGCUGGg -3'
miRNA:   3'- aGGA-GUuCUgCGAGUACG----------CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 38147 0.66 0.812181
Target:  5'- -gCUCAccGGcCGCggCAuccUGCGCGGCCGc -3'
miRNA:   3'- agGAGU--UCuGCGa-GU---ACGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 42958 0.66 0.812181
Target:  5'- gCCUCAgggaGGACGaggacgGCGCGGCgaCGGg -3'
miRNA:   3'- aGGAGU----UCUGCgagua-CGCGCCG--GCC- -5'
25509 5' -57.5 NC_005337.1 + 77969 0.66 0.812181
Target:  5'- cUCCUgCGAGAU-CUCGaGCaGCGGCCGc -3'
miRNA:   3'- -AGGA-GUUCUGcGAGUaCG-CGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 89856 0.66 0.812181
Target:  5'- gCCUCGAGcUGCUUcuccgaGCGCGcGCUGGc -3'
miRNA:   3'- aGGAGUUCuGCGAGua----CGCGC-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 43877 0.67 0.804314
Target:  5'- -gCgu-GGACGCggagauggugaugugCAcGCGCGGCCGGa -3'
miRNA:   3'- agGaguUCUGCGa--------------GUaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 17556 0.67 0.803432
Target:  5'- gUCCaCGAGGucggagUGCUUGUGCcgcgccauuGCGGCCGGc -3'
miRNA:   3'- -AGGaGUUCU------GCGAGUACG---------CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 38973 0.67 0.803432
Target:  5'- gCC-CGAG-UGCgCGUGCGUcaccGGCCGGg -3'
miRNA:   3'- aGGaGUUCuGCGaGUACGCG----CCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 35388 0.67 0.803432
Target:  5'- -gCUCGAGcGCGCaguccgCGcGCGCGGCgCGGu -3'
miRNA:   3'- agGAGUUC-UGCGa-----GUaCGCGCCG-GCC- -5'
25509 5' -57.5 NC_005337.1 + 103992 0.67 0.803432
Target:  5'- gCCgUCcuGGCGCUCAccUGCGC-GCCGu -3'
miRNA:   3'- aGG-AGuuCUGCGAGU--ACGCGcCGGCc -5'
25509 5' -57.5 NC_005337.1 + 99697 0.67 0.803432
Target:  5'- gCUUCGAcGCGCUgc-GCGCGGCCa- -3'
miRNA:   3'- aGGAGUUcUGCGAguaCGCGCCGGcc -5'
25509 5' -57.5 NC_005337.1 + 73301 0.67 0.798108
Target:  5'- uUCUUCGAGucccagcgcgugggcGCGCgcccCAUGCGCauGCCGGc -3'
miRNA:   3'- -AGGAGUUC---------------UGCGa---GUACGCGc-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 132103 0.67 0.79453
Target:  5'- gCCgugcgCGucGGCGC-CGUGCGCGGCaGGc -3'
miRNA:   3'- aGGa----GUu-CUGCGaGUACGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 94554 0.67 0.79453
Target:  5'- cUCCgagUCGAuGCGCUUGauggGCGCGGCCa- -3'
miRNA:   3'- -AGG---AGUUcUGCGAGUa---CGCGCCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.