Results 21 - 40 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25509 | 5' | -57.5 | NC_005337.1 | + | 76222 | 0.66 | 0.828355 |
Target: 5'- gUCCUCGGGGuuggcgagcacgcCGC-CGUcgaagaGCGCGGCCuGGc -3' miRNA: 3'- -AGGAGUUCU-------------GCGaGUA------CGCGCCGG-CC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 96124 | 0.66 | 0.82077 |
Target: 5'- gCCgcgCAGGAUGC-----CGCGGCCGGu -3' miRNA: 3'- aGGa--GUUCUGCGaguacGCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 11390 | 0.66 | 0.82077 |
Target: 5'- gCCg-AAGuCGUUCAgcgugcGCGCGGCCGa -3' miRNA: 3'- aGGagUUCuGCGAGUa-----CGCGCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 519 | 0.66 | 0.82077 |
Target: 5'- cUCCUCGcggcgcAGGCGCUCca--GCuGCCGGc -3' miRNA: 3'- -AGGAGU------UCUGCGAGuacgCGcCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 68224 | 0.66 | 0.82077 |
Target: 5'- gCCUgAcGGCGUcCGgguuccggaGCGCGGCCGGc -3' miRNA: 3'- aGGAgUuCUGCGaGUa--------CGCGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 80478 | 0.66 | 0.845492 |
Target: 5'- aCUUCGGGAgcaCGUacUCgAUGCgccccGCGGCCGGg -3' miRNA: 3'- aGGAGUUCU---GCG--AG-UACG-----CGCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 120558 | 0.66 | 0.853361 |
Target: 5'- gUCCUCGcGGA-GCUCggugGUGUGCGGCaaccCGGc -3' miRNA: 3'- -AGGAGU-UCUgCGAG----UACGCGCCG----GCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 77969 | 0.66 | 0.812181 |
Target: 5'- cUCCUgCGAGAU-CUCGaGCaGCGGCCGc -3' miRNA: 3'- -AGGA-GUUCUGcGAGUaCG-CGCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 130783 | 0.66 | 0.853361 |
Target: 5'- aCCU--GGGCGCcgCcgGUGCGGCUGc -3' miRNA: 3'- aGGAguUCUGCGa-GuaCGCGCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 89856 | 0.66 | 0.812181 |
Target: 5'- gCCUCGAGcUGCUUcuccgaGCGCGcGCUGGc -3' miRNA: 3'- aGGAGUUCuGCGAGua----CGCGC-CGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 45040 | 0.66 | 0.837433 |
Target: 5'- gCCgCAcGAUGCUCcgcaagcuggGCGcCGGCCGGc -3' miRNA: 3'- aGGaGUuCUGCGAGua--------CGC-GCCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 64894 | 0.67 | 0.776301 |
Target: 5'- gCCUCAcagAGGCGgaCcugGCGCuagcGGCCGGc -3' miRNA: 3'- aGGAGU---UCUGCgaGua-CGCG----CCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 43154 | 0.67 | 0.766992 |
Target: 5'- -gCUCuccAUGCUCAUGCGCGccgaCCGGa -3' miRNA: 3'- agGAGuucUGCGAGUACGCGCc---GGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 44625 | 0.67 | 0.766992 |
Target: 5'- aCCUgAAGGCGCugcuccugaUCGUGCGCcGCagCGGg -3' miRNA: 3'- aGGAgUUCUGCG---------AGUACGCGcCG--GCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 113615 | 0.67 | 0.776301 |
Target: 5'- cCCUCuGGuccGCGC-CGUGCGaGGCCGa -3' miRNA: 3'- aGGAGuUC---UGCGaGUACGCgCCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 94554 | 0.67 | 0.79453 |
Target: 5'- cUCCgagUCGAuGCGCUUGauggGCGCGGCCa- -3' miRNA: 3'- -AGG---AGUUcUGCGAGUa---CGCGCCGGcc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 73301 | 0.67 | 0.798108 |
Target: 5'- uUCUUCGAGucccagcgcgugggcGCGCgcccCAUGCGCauGCCGGc -3' miRNA: 3'- -AGGAGUUC---------------UGCGa---GUACGCGc-CGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 38973 | 0.67 | 0.803432 |
Target: 5'- gCC-CGAG-UGCgCGUGCGUcaccGGCCGGg -3' miRNA: 3'- aGGaGUUCuGCGaGUACGCG----CCGGCC- -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 103992 | 0.67 | 0.803432 |
Target: 5'- gCCgUCcuGGCGCUCAccUGCGC-GCCGu -3' miRNA: 3'- aGG-AGuuCUGCGAGU--ACGCGcCGGCc -5' |
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25509 | 5' | -57.5 | NC_005337.1 | + | 3363 | 0.67 | 0.776301 |
Target: 5'- aCCgcuugCAGGAgGU--GUGCGCGGCCa- -3' miRNA: 3'- aGGa----GUUCUgCGagUACGCGCCGGcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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