miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 23535 0.66 0.845492
Target:  5'- -gCUCAuccGGGCcaugGCcaUCAUGCGguCGGCCGGg -3'
miRNA:   3'- agGAGU---UCUG----CG--AGUACGC--GCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 24434 0.66 0.845492
Target:  5'- aCCUCAAGuuCGCgCAgacCGCcGCCGGg -3'
miRNA:   3'- aGGAGUUCu-GCGaGUac-GCGcCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 28873 0.68 0.738392
Target:  5'- gUCCaaCAAGACGgaCGUGCagacgugcaacCGGCCGGg -3'
miRNA:   3'- -AGGa-GUUCUGCgaGUACGc----------GCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 29204 0.73 0.434382
Target:  5'- gCCgaagGAGGCGCUgcgCAgcgccGCGCGGCCGGg -3'
miRNA:   3'- aGGag--UUCUGCGA---GUa----CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 35099 0.72 0.499079
Target:  5'- aUCUCGAcGCGCaUCGUccGCGCGGCgCGGa -3'
miRNA:   3'- aGGAGUUcUGCG-AGUA--CGCGCCG-GCC- -5'
25509 5' -57.5 NC_005337.1 + 35388 0.67 0.803432
Target:  5'- -gCUCGAGcGCGCaguccgCGcGCGCGGCgCGGu -3'
miRNA:   3'- agGAGUUC-UGCGa-----GUaCGCGCCG-GCC- -5'
25509 5' -57.5 NC_005337.1 + 35427 0.68 0.718855
Target:  5'- -gCUCGauGGACGCgCAcgGCGCGGUgGGc -3'
miRNA:   3'- agGAGU--UCUGCGaGUa-CGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 36113 0.68 0.718855
Target:  5'- uUCaUCAAGuGCGCaggcacccugUCGUGCGCGGCgugCGGg -3'
miRNA:   3'- -AGgAGUUC-UGCG----------AGUACGCGCCG---GCC- -5'
25509 5' -57.5 NC_005337.1 + 36424 0.69 0.678974
Target:  5'- gUCCUCGc-GCGcCUCAcccggcugcagcUGCGCGGgCGGa -3'
miRNA:   3'- -AGGAGUucUGC-GAGU------------ACGCGCCgGCC- -5'
25509 5' -57.5 NC_005337.1 + 37889 0.66 0.853361
Target:  5'- gUCCUCcgccgccUGCUCggGCGCGaCCGGg -3'
miRNA:   3'- -AGGAGuucu---GCGAGuaCGCGCcGGCC- -5'
25509 5' -57.5 NC_005337.1 + 38147 0.66 0.812181
Target:  5'- -gCUCAccGGcCGCggCAuccUGCGCGGCCGc -3'
miRNA:   3'- agGAGU--UCuGCGa-GU---ACGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 38453 0.7 0.638484
Target:  5'- gCC-CGAGGCGUacgccuUCAUGCgguGCGcGCCGGg -3'
miRNA:   3'- aGGaGUUCUGCG------AGUACG---CGC-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 38860 0.66 0.845492
Target:  5'- cCCgCGuGACGCUCGUGCG-GGCg-- -3'
miRNA:   3'- aGGaGUuCUGCGAGUACGCgCCGgcc -5'
25509 5' -57.5 NC_005337.1 + 38973 0.67 0.803432
Target:  5'- gCC-CGAG-UGCgCGUGCGUcaccGGCCGGg -3'
miRNA:   3'- aGGaGUUCuGCGaGUACGCG----CCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 42524 0.81 0.15561
Target:  5'- gCUUCGAGGCGCacgCGcGCGUGGCCGGg -3'
miRNA:   3'- aGGAGUUCUGCGa--GUaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 42535 0.69 0.698027
Target:  5'- uUCC-CGccggacgcgcugcGGGCGCUgGUGCggcuGCGGCUGGa -3'
miRNA:   3'- -AGGaGU-------------UCUGCGAgUACG----CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 42958 0.66 0.812181
Target:  5'- gCCUCAgggaGGACGaggacgGCGCGGCgaCGGg -3'
miRNA:   3'- aGGAGU----UCUGCgagua-CGCGCCG--GCC- -5'
25509 5' -57.5 NC_005337.1 + 43154 0.67 0.766992
Target:  5'- -gCUCuccAUGCUCAUGCGCGccgaCCGGa -3'
miRNA:   3'- agGAGuucUGCGAGUACGCGCc---GGCC- -5'
25509 5' -57.5 NC_005337.1 + 43877 0.67 0.804314
Target:  5'- -gCgu-GGACGCggagauggugaugugCAcGCGCGGCCGGa -3'
miRNA:   3'- agGaguUCUGCGa--------------GUaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 44464 0.67 0.785484
Target:  5'- gCCUCGccgagcuggAGGCcaGUUCGagGCGCGGCCGc -3'
miRNA:   3'- aGGAGU---------UCUG--CGAGUa-CGCGCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.