miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 519 0.66 0.82077
Target:  5'- cUCCUCGcggcgcAGGCGCUCca--GCuGCCGGc -3'
miRNA:   3'- -AGGAGU------UCUGCGAGuacgCGcCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 519 0.66 0.82077
Target:  5'- cUCCUCGcggcgcAGGCGCUCca--GCuGCCGGc -3'
miRNA:   3'- -AGGAGU------UCUGCGAGuacgCGcCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 845 0.7 0.638484
Target:  5'- -gCUCGacgaAGGCgGCgggCAgcgcggGCGCGGCCGGg -3'
miRNA:   3'- agGAGU----UCUG-CGa--GUa-----CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 845 0.7 0.638484
Target:  5'- -gCUCGacgaAGGCgGCgggCAgcgcggGCGCGGCCGGg -3'
miRNA:   3'- agGAGU----UCUG-CGa--GUa-----CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 1873 0.66 0.837433
Target:  5'- cUCCUCgAAGAuCGCgg--GcCGgGGCCGGu -3'
miRNA:   3'- -AGGAG-UUCU-GCGaguaC-GCgCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 2865 0.67 0.785484
Target:  5'- gCCgaucGGCGcCUCAccaGCGUGGCCGGc -3'
miRNA:   3'- aGGaguuCUGC-GAGUa--CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 3363 0.67 0.776301
Target:  5'- aCCgcuugCAGGAgGU--GUGCGCGGCCa- -3'
miRNA:   3'- aGGa----GUUCUgCGagUACGCGCCGGcc -5'
25509 5' -57.5 NC_005337.1 + 6551 0.71 0.546806
Target:  5'- cUCCuUCAgcagcguGGACGC-CAgcgcUGCGCGGuCCGGa -3'
miRNA:   3'- -AGG-AGU-------UCUGCGaGU----ACGCGCC-GGCC- -5'
25509 5' -57.5 NC_005337.1 + 11369 0.7 0.622237
Target:  5'- cCCUCGAGcGCGCUCGccaucggcgggcugaUGCGCcagGGCCccGGg -3'
miRNA:   3'- aGGAGUUC-UGCGAGU---------------ACGCG---CCGG--CC- -5'
25509 5' -57.5 NC_005337.1 + 11390 0.66 0.82077
Target:  5'- gCCg-AAGuCGUUCAgcgugcGCGCGGCCGa -3'
miRNA:   3'- aGGagUUCuGCGAGUa-----CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 12252 0.72 0.499079
Target:  5'- gUUCUCGAGcAUGUcCGU-CGCGGCCGGg -3'
miRNA:   3'- -AGGAGUUC-UGCGaGUAcGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 13012 0.66 0.837433
Target:  5'- cCCUgAAGACgGCg---GUGUGGUCGGa -3'
miRNA:   3'- aGGAgUUCUG-CGaguaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 16631 0.71 0.567715
Target:  5'- uUCUUCGAG-CGCUCcaccacggcgGUGacgcgGCGGCCGGu -3'
miRNA:   3'- -AGGAGUUCuGCGAG----------UACg----CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 17556 0.67 0.803432
Target:  5'- gUCCaCGAGGucggagUGCUUGUGCcgcgccauuGCGGCCGGc -3'
miRNA:   3'- -AGGaGUUCU------GCGAGUACG---------CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 19996 0.68 0.718855
Target:  5'- gUCCUC-GGGCaGCaCGUGCuGCGGgCGGa -3'
miRNA:   3'- -AGGAGuUCUG-CGaGUACG-CGCCgGCC- -5'
25509 5' -57.5 NC_005337.1 + 21900 0.69 0.658771
Target:  5'- cUCCUcCAGGACGCgcgcuUCAUGgagGUGGCCGc -3'
miRNA:   3'- -AGGA-GUUCUGCG-----AGUACg--CGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 22832 0.67 0.79453
Target:  5'- uUCCUCAccgaGGAcgaccCGCUCGUGCuggaccGCGGCgCGc -3'
miRNA:   3'- -AGGAGU----UCU-----GCGAGUACG------CGCCG-GCc -5'
25509 5' -57.5 NC_005337.1 + 23043 0.67 0.785484
Target:  5'- gUCCUCGuucguGACGCaCGccGCGCG-CCGGa -3'
miRNA:   3'- -AGGAGUu----CUGCGaGUa-CGCGCcGGCC- -5'
25509 5' -57.5 NC_005337.1 + 23057 0.81 0.151712
Target:  5'- cCUUCAGGaugGCGCUCGUGgGCGGCuCGGg -3'
miRNA:   3'- aGGAGUUC---UGCGAGUACgCGCCG-GCC- -5'
25509 5' -57.5 NC_005337.1 + 23116 0.68 0.708972
Target:  5'- cUCUUCcGGACGCUgGUGCGCcGCUu- -3'
miRNA:   3'- -AGGAGuUCUGCGAgUACGCGcCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.