miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 70789 0.68 0.718855
Target:  5'- -aCUC-GGAgGC-CAUGCgGCGGCUGGu -3'
miRNA:   3'- agGAGuUCUgCGaGUACG-CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 21900 0.69 0.658771
Target:  5'- cUCCUcCAGGACGCgcgcuUCAUGgagGUGGCCGc -3'
miRNA:   3'- -AGGA-GUUCUGCG-----AGUACg--CGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 83962 0.69 0.658771
Target:  5'- gUCCgcgCAGGGCaGCggcgGCGCGGgCGGg -3'
miRNA:   3'- -AGGa--GUUCUG-CGaguaCGCGCCgGCC- -5'
25509 5' -57.5 NC_005337.1 + 101502 0.69 0.668887
Target:  5'- -gCUCAugcgcgaGCGCUCc-GCGCGGCUGGa -3'
miRNA:   3'- agGAGUuc-----UGCGAGuaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 67447 0.69 0.678974
Target:  5'- aCUUCGAGACGgugaUCcgGCGCaGCCGc -3'
miRNA:   3'- aGGAGUUCUGCg---AGuaCGCGcCGGCc -5'
25509 5' -57.5 NC_005337.1 + 36424 0.69 0.678974
Target:  5'- gUCCUCGc-GCGcCUCAcccggcugcagcUGCGCGGgCGGa -3'
miRNA:   3'- -AGGAGUucUGC-GAGU------------ACGCGCCgGCC- -5'
25509 5' -57.5 NC_005337.1 + 42535 0.69 0.698027
Target:  5'- uUCC-CGccggacgcgcugcGGGCGCUgGUGCggcuGCGGCUGGa -3'
miRNA:   3'- -AGGaGU-------------UCUGCGAgUACG----CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 128630 0.69 0.699025
Target:  5'- cCCUCGguuucccugcuGGAUa-UCcUGCGCGGCCGGu -3'
miRNA:   3'- aGGAGU-----------UCUGcgAGuACGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 58108 0.68 0.708972
Target:  5'- uUCUUCAgcaAGACGC-CggGCGUGGggaCCGGg -3'
miRNA:   3'- -AGGAGU---UCUGCGaGuaCGCGCC---GGCC- -5'
25509 5' -57.5 NC_005337.1 + 845 0.7 0.638484
Target:  5'- -gCUCGacgaAGGCgGCgggCAgcgcggGCGCGGCCGGg -3'
miRNA:   3'- agGAGU----UCUG-CGa--GUa-----CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 38453 0.7 0.638484
Target:  5'- gCC-CGAGGCGUacgccuUCAUGCgguGCGcGCCGGg -3'
miRNA:   3'- aGGaGUUCUGCG------AGUACG---CGC-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 78616 0.7 0.607022
Target:  5'- gUCCUUgccgcggGAGACGUUCGaggugaGCGCGGUgGGg -3'
miRNA:   3'- -AGGAG-------UUCUGCGAGUa-----CGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 29204 0.73 0.434382
Target:  5'- gCCgaagGAGGCGCUgcgCAgcgccGCGCGGCCGGg -3'
miRNA:   3'- aGGag--UUCUGCGA---GUa----CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 118088 0.73 0.452385
Target:  5'- cUCCUCGGGGCuCUCcgGCGCGuGgUGGa -3'
miRNA:   3'- -AGGAGUUCUGcGAGuaCGCGC-CgGCC- -5'
25509 5' -57.5 NC_005337.1 + 102429 0.73 0.452385
Target:  5'- aUCCcCGAGuacgugaacGCGCUCAU-CGCGGCCGa -3'
miRNA:   3'- -AGGaGUUC---------UGCGAGUAcGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 99454 0.73 0.468002
Target:  5'- aCCUCGuGGACGCgcgCGUGCGCgagggcgucuucguGGCCGu -3'
miRNA:   3'- aGGAGU-UCUGCGa--GUACGCG--------------CCGGCc -5'
25509 5' -57.5 NC_005337.1 + 59339 0.72 0.489561
Target:  5'- aCUUCgAGGACGaccaCUgGUGCGCGGCCGc -3'
miRNA:   3'- aGGAG-UUCUGC----GAgUACGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 70146 0.72 0.518355
Target:  5'- cCCUucCAGGACGC-CAUGCGCcgcgugagccaGGCCGu -3'
miRNA:   3'- aGGA--GUUCUGCGaGUACGCG-----------CCGGCc -5'
25509 5' -57.5 NC_005337.1 + 121562 0.71 0.557731
Target:  5'- cUCCUCGAG-CGCggcgCGcGCGCGGacgccaCCGGg -3'
miRNA:   3'- -AGGAGUUCuGCGa---GUaCGCGCC------GGCC- -5'
25509 5' -57.5 NC_005337.1 + 16631 0.71 0.567715
Target:  5'- uUCUUCGAG-CGCUCcaccacggcgGUGacgcgGCGGCCGGu -3'
miRNA:   3'- -AGGAGUUCuGCGAG----------UACg----CGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.