miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 42958 0.66 0.812181
Target:  5'- gCCUCAgggaGGACGaggacgGCGCGGCgaCGGg -3'
miRNA:   3'- aGGAGU----UCUGCgagua-CGCGCCG--GCC- -5'
25509 5' -57.5 NC_005337.1 + 38147 0.66 0.812181
Target:  5'- -gCUCAccGGcCGCggCAuccUGCGCGGCCGc -3'
miRNA:   3'- agGAGU--UCuGCGa-GU---ACGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 130783 0.66 0.853361
Target:  5'- aCCU--GGGCGCcgCcgGUGCGGCUGc -3'
miRNA:   3'- aGGAguUCUGCGa-GuaCGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 38860 0.66 0.845492
Target:  5'- cCCgCGuGACGCUCGUGCG-GGCg-- -3'
miRNA:   3'- aGGaGUuCUGCGAGUACGCgCCGgcc -5'
25509 5' -57.5 NC_005337.1 + 80478 0.66 0.845492
Target:  5'- aCUUCGGGAgcaCGUacUCgAUGCgccccGCGGCCGGg -3'
miRNA:   3'- aGGAGUUCU---GCG--AG-UACG-----CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 1873 0.66 0.837433
Target:  5'- cUCCUCgAAGAuCGCgg--GcCGgGGCCGGu -3'
miRNA:   3'- -AGGAG-UUCU-GCGaguaC-GCgCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 45040 0.66 0.837433
Target:  5'- gCCgCAcGAUGCUCcgcaagcuggGCGcCGGCCGGc -3'
miRNA:   3'- aGGaGUuCUGCGAGua--------CGC-GCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 51518 0.66 0.853361
Target:  5'- aUCaUCAuGGCGCUCuucgGCGUGcggcuGCCGGg -3'
miRNA:   3'- -AGgAGUuCUGCGAGua--CGCGC-----CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 519 0.66 0.82077
Target:  5'- cUCCUCGcggcgcAGGCGCUCca--GCuGCCGGc -3'
miRNA:   3'- -AGGAGU------UCUGCGAGuacgCGcCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 103858 0.66 0.845492
Target:  5'- aUCCUCAAGcgGCaGUUCGcggaGCGCGGCgGc -3'
miRNA:   3'- -AGGAGUUC--UG-CGAGUa---CGCGCCGgCc -5'
25509 5' -57.5 NC_005337.1 + 120558 0.66 0.853361
Target:  5'- gUCCUCGcGGA-GCUCggugGUGUGCGGCaaccCGGc -3'
miRNA:   3'- -AGGAGU-UCUgCGAG----UACGCGCCG----GCC- -5'
25509 5' -57.5 NC_005337.1 + 71264 0.66 0.837433
Target:  5'- gUCgaCAAcGCGCUCAUGCGCcgcguggcGCUGGu -3'
miRNA:   3'- -AGgaGUUcUGCGAGUACGCGc-------CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 11390 0.66 0.82077
Target:  5'- gCCg-AAGuCGUUCAgcgugcGCGCGGCCGa -3'
miRNA:   3'- aGGagUUCuGCGAGUa-----CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 86172 0.66 0.829189
Target:  5'- gUCUUCAcGaaGCGCUCcgGCGCGuCCGu -3'
miRNA:   3'- -AGGAGUuC--UGCGAGuaCGCGCcGGCc -5'
25509 5' -57.5 NC_005337.1 + 77969 0.66 0.812181
Target:  5'- cUCCUgCGAGAU-CUCGaGCaGCGGCCGc -3'
miRNA:   3'- -AGGA-GUUCUGcGAGUaCG-CGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 96124 0.66 0.82077
Target:  5'- gCCgcgCAGGAUGC-----CGCGGCCGGu -3'
miRNA:   3'- aGGa--GUUCUGCGaguacGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 76222 0.66 0.828355
Target:  5'- gUCCUCGGGGuuggcgagcacgcCGC-CGUcgaagaGCGCGGCCuGGc -3'
miRNA:   3'- -AGGAGUUCU-------------GCGaGUA------CGCGCCGG-CC- -5'
25509 5' -57.5 NC_005337.1 + 89856 0.66 0.812181
Target:  5'- gCCUCGAGcUGCUUcuccgaGCGCGcGCUGGc -3'
miRNA:   3'- aGGAGUUCuGCGAGua----CGCGC-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 37889 0.66 0.853361
Target:  5'- gUCCUCcgccgccUGCUCggGCGCGaCCGGg -3'
miRNA:   3'- -AGGAGuucu---GCGAGuaCGCGCcGGCC- -5'
25509 5' -57.5 NC_005337.1 + 101563 0.66 0.853361
Target:  5'- uUCCUCAAGGagcUGCUCGUGaGCGGa--- -3'
miRNA:   3'- -AGGAGUUCU---GCGAGUACgCGCCggcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.