miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 130399 1.1 0.001636
Target:  5'- gUCCUCAAGACGCUCAUGCGCGGCCGGu -3'
miRNA:   3'- -AGGAGUUCUGCGAGUACGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 23057 0.81 0.151712
Target:  5'- cCUUCAGGaugGCGCUCGUGgGCGGCuCGGg -3'
miRNA:   3'- aGGAGUUC---UGCGAGUACgCGCCG-GCC- -5'
25509 5' -57.5 NC_005337.1 + 42524 0.81 0.15561
Target:  5'- gCUUCGAGGCGCacgCGcGCGUGGCCGGg -3'
miRNA:   3'- aGGAGUUCUGCGa--GUaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 95890 0.76 0.292983
Target:  5'- gUCUagCAGGGCGCUCGUGCucgcggcgacgGCGGCCGc -3'
miRNA:   3'- -AGGa-GUUCUGCGAGUACG-----------CGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 108560 0.75 0.351036
Target:  5'- gCCU---GACGCUgGcgGCGCGGCCGGa -3'
miRNA:   3'- aGGAguuCUGCGAgUa-CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 125249 0.75 0.366769
Target:  5'- gCCUCAgcuacGGACGCUCAUcGUGCGuGCCcaGGa -3'
miRNA:   3'- aGGAGU-----UCUGCGAGUA-CGCGC-CGG--CC- -5'
25509 5' -57.5 NC_005337.1 + 101107 0.74 0.391265
Target:  5'- aUCCUCucgaAGGACGaCUCAgaGCGCGGCUGc -3'
miRNA:   3'- -AGGAG----UUCUGC-GAGUa-CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 123692 0.74 0.416802
Target:  5'- gUCCac-GGACGC-CGUGCgGCGGCUGGg -3'
miRNA:   3'- -AGGaguUCUGCGaGUACG-CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 29204 0.73 0.434382
Target:  5'- gCCgaagGAGGCGCUgcgCAgcgccGCGCGGCCGGg -3'
miRNA:   3'- aGGag--UUCUGCGA---GUa----CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 118088 0.73 0.452385
Target:  5'- cUCCUCGGGGCuCUCcgGCGCGuGgUGGa -3'
miRNA:   3'- -AGGAGUUCUGcGAGuaCGCGC-CgGCC- -5'
25509 5' -57.5 NC_005337.1 + 102429 0.73 0.452385
Target:  5'- aUCCcCGAGuacgugaacGCGCUCAU-CGCGGCCGa -3'
miRNA:   3'- -AGGaGUUC---------UGCGAGUAcGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 95108 0.73 0.452385
Target:  5'- cUCCUCGAGGCGCUC----GCGGUCGu -3'
miRNA:   3'- -AGGAGUUCUGCGAGuacgCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 120454 0.73 0.461537
Target:  5'- cCCUgCGGGgcGCGCUCGaGCGCGcGCUGGa -3'
miRNA:   3'- aGGA-GUUC--UGCGAGUaCGCGC-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 99454 0.73 0.468002
Target:  5'- aCCUCGuGGACGCgcgCGUGCGCgagggcgucuucguGGCCGu -3'
miRNA:   3'- aGGAGU-UCUGCGa--GUACGCG--------------CCGGCc -5'
25509 5' -57.5 NC_005337.1 + 59339 0.72 0.489561
Target:  5'- aCUUCgAGGACGaccaCUgGUGCGCGGCCGc -3'
miRNA:   3'- aGGAG-UUCUGC----GAgUACGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 35099 0.72 0.499079
Target:  5'- aUCUCGAcGCGCaUCGUccGCGCGGCgCGGa -3'
miRNA:   3'- aGGAGUUcUGCG-AGUA--CGCGCCG-GCC- -5'
25509 5' -57.5 NC_005337.1 + 12252 0.72 0.499079
Target:  5'- gUUCUCGAGcAUGUcCGU-CGCGGCCGGg -3'
miRNA:   3'- -AGGAGUUC-UGCGaGUAcGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 56113 0.72 0.504829
Target:  5'- -gCUCGAGGCGCacggcaucgccagCGUGCGCGGCgugcagCGGg -3'
miRNA:   3'- agGAGUUCUGCGa------------GUACGCGCCG------GCC- -5'
25509 5' -57.5 NC_005337.1 + 70146 0.72 0.518355
Target:  5'- cCCUucCAGGACGC-CAUGCGCcgcgugagccaGGCCGu -3'
miRNA:   3'- aGGA--GUUCUGCGaGUACGCG-----------CCGGCc -5'
25509 5' -57.5 NC_005337.1 + 6551 0.71 0.546806
Target:  5'- cUCCuUCAgcagcguGGACGC-CAgcgcUGCGCGGuCCGGa -3'
miRNA:   3'- -AGG-AGU-------UCUGCGaGU----ACGCGCC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.