miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 94026 0.71 0.547797
Target:  5'- gUCUCGugguGGCGCggCGcgGCGCGGCCGa -3'
miRNA:   3'- aGGAGUu---CUGCGa-GUa-CGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 121562 0.71 0.557731
Target:  5'- cUCCUCGAG-CGCggcgCGcGCGCGGacgccaCCGGg -3'
miRNA:   3'- -AGGAGUUCuGCGa---GUaCGCGCC------GGCC- -5'
25509 5' -57.5 NC_005337.1 + 16631 0.71 0.567715
Target:  5'- uUCUUCGAG-CGCUCcaccacggcgGUGacgcgGCGGCCGGu -3'
miRNA:   3'- -AGGAGUUCuGCGAG----------UACg----CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 50223 0.71 0.577745
Target:  5'- gCCUCcccgAGGGCG-UCGUGCGCGccuccGCCGGu -3'
miRNA:   3'- aGGAG----UUCUGCgAGUACGCGC-----CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 66019 0.71 0.577745
Target:  5'- gUCCUC--GACGCUCGcccacGCGCcGGCCGc -3'
miRNA:   3'- -AGGAGuuCUGCGAGUa----CGCG-CCGGCc -5'
25509 5' -57.5 NC_005337.1 + 86507 0.7 0.597911
Target:  5'- cCCUCgAAGuACGCguugGCGCGGCgGGc -3'
miRNA:   3'- aGGAG-UUC-UGCGaguaCGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 78616 0.7 0.607022
Target:  5'- gUCCUUgccgcggGAGACGUUCGaggugaGCGCGGUgGGg -3'
miRNA:   3'- -AGGAG-------UUCUGCGAGUa-----CGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 124315 0.7 0.608035
Target:  5'- cUCCgUCGcggcgcAGGCGCUCAUGgaCGCGGCgCGa -3'
miRNA:   3'- -AGG-AGU------UCUGCGAGUAC--GCGCCG-GCc -5'
25509 5' -57.5 NC_005337.1 + 11369 0.7 0.622237
Target:  5'- cCCUCGAGcGCGCUCGccaucggcgggcugaUGCGCcagGGCCccGGg -3'
miRNA:   3'- aGGAGUUC-UGCGAGU---------------ACGCG---CCGG--CC- -5'
25509 5' -57.5 NC_005337.1 + 845 0.7 0.638484
Target:  5'- -gCUCGacgaAGGCgGCgggCAgcgcggGCGCGGCCGGg -3'
miRNA:   3'- agGAGU----UCUG-CGa--GUa-----CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 47614 0.7 0.638484
Target:  5'- aCUUCGAGGCGgaCAacaagcgucUGCGCGccaccGCCGGg -3'
miRNA:   3'- aGGAGUUCUGCgaGU---------ACGCGC-----CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 845 0.7 0.638484
Target:  5'- -gCUCGacgaAGGCgGCgggCAgcgcggGCGCGGCCGGg -3'
miRNA:   3'- agGAGU----UCUG-CGa--GUa-----CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 38453 0.7 0.638484
Target:  5'- gCC-CGAGGCGUacgccuUCAUGCgguGCGcGCCGGg -3'
miRNA:   3'- aGGaGUUCUGCG------AGUACG---CGC-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 100014 0.69 0.648634
Target:  5'- gUCCUCAAGGCGUaCcuGUGCGCGcGCa-- -3'
miRNA:   3'- -AGGAGUUCUGCGaG--UACGCGC-CGgcc -5'
25509 5' -57.5 NC_005337.1 + 65971 0.69 0.657758
Target:  5'- cUCCUCGGGcACGCgCGUccacgccGC-CGGCCGGc -3'
miRNA:   3'- -AGGAGUUC-UGCGaGUA-------CGcGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 21900 0.69 0.658771
Target:  5'- cUCCUcCAGGACGCgcgcuUCAUGgagGUGGCCGc -3'
miRNA:   3'- -AGGA-GUUCUGCG-----AGUACg--CGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 83962 0.69 0.658771
Target:  5'- gUCCgcgCAGGGCaGCggcgGCGCGGgCGGg -3'
miRNA:   3'- -AGGa--GUUCUG-CGaguaCGCGCCgGCC- -5'
25509 5' -57.5 NC_005337.1 + 66523 0.69 0.667876
Target:  5'- gCCggcCGAGACGCUgGagcUGCGCGccgcgccGCCGGu -3'
miRNA:   3'- aGGa--GUUCUGCGAgU---ACGCGC-------CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 101502 0.69 0.668887
Target:  5'- -gCUCAugcgcgaGCGCUCc-GCGCGGCUGGa -3'
miRNA:   3'- agGAGUuc-----UGCGAGuaCGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 89932 0.69 0.668887
Target:  5'- cUCCUCAcagaGGGcCGCgCGgauaaagGCGCGGCCGc -3'
miRNA:   3'- -AGGAGU----UCU-GCGaGUa------CGCGCCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.