miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 132415 0.69 0.668887
Target:  5'- aUCUUCGAGGaGCUCAUcaGcCGCGGCUGc -3'
miRNA:   3'- -AGGAGUUCUgCGAGUA--C-GCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 132103 0.67 0.79453
Target:  5'- gCCgugcgCGucGGCGC-CGUGCGCGGCaGGc -3'
miRNA:   3'- aGGa----GUu-CUGCGaGUACGCGCCGgCC- -5'
25509 5' -57.5 NC_005337.1 + 131313 0.68 0.718855
Target:  5'- gCCgagugCGAGgcggagaccGCGCUCAUGCGC-GCCGu -3'
miRNA:   3'- aGGa----GUUC---------UGCGAGUACGCGcCGGCc -5'
25509 5' -57.5 NC_005337.1 + 130950 0.69 0.678974
Target:  5'- uUCCU--GGACGC-CG-GCGUGGCCGu -3'
miRNA:   3'- -AGGAguUCUGCGaGUaCGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 130783 0.66 0.853361
Target:  5'- aCCU--GGGCGCcgCcgGUGCGGCUGc -3'
miRNA:   3'- aGGAguUCUGCGa-GuaCGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 130729 0.68 0.728664
Target:  5'- cUCgUCGAG-CGCUCGUG-GCcGCUGGg -3'
miRNA:   3'- -AGgAGUUCuGCGAGUACgCGcCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 130399 1.1 0.001636
Target:  5'- gUCCUCAAGACGCUCAUGCGCGGCCGGu -3'
miRNA:   3'- -AGGAGUUCUGCGAGUACGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 129876 0.68 0.748029
Target:  5'- cCCUCGAuacggcaucucGcCGCUgcaCAUG-GCGGCCGGg -3'
miRNA:   3'- aGGAGUU-----------CuGCGA---GUACgCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 128630 0.69 0.699025
Target:  5'- cCCUCGguuucccugcuGGAUa-UCcUGCGCGGCCGGu -3'
miRNA:   3'- aGGAGU-----------UCUGcgAGuACGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 126919 0.67 0.766992
Target:  5'- aUCgUCGAGACGCUgCuggagGCG-GGCgCGGa -3'
miRNA:   3'- -AGgAGUUCUGCGA-Gua---CGCgCCG-GCC- -5'
25509 5' -57.5 NC_005337.1 + 125249 0.75 0.366769
Target:  5'- gCCUCAgcuacGGACGCUCAUcGUGCGuGCCcaGGa -3'
miRNA:   3'- aGGAGU-----UCUGCGAGUA-CGCGC-CGG--CC- -5'
25509 5' -57.5 NC_005337.1 + 124315 0.7 0.608035
Target:  5'- cUCCgUCGcggcgcAGGCGCUCAUGgaCGCGGCgCGa -3'
miRNA:   3'- -AGG-AGU------UCUGCGAGUAC--GCGCCG-GCc -5'
25509 5' -57.5 NC_005337.1 + 123692 0.74 0.416802
Target:  5'- gUCCac-GGACGC-CGUGCgGCGGCUGGg -3'
miRNA:   3'- -AGGaguUCUGCGaGUACG-CGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 123546 0.69 0.668887
Target:  5'- uUCCUCGAcAUcCUCcgGCGcCGGUCGGa -3'
miRNA:   3'- -AGGAGUUcUGcGAGuaCGC-GCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 122198 0.68 0.737423
Target:  5'- gCCUCAucgccgcGGGCGCggacgugUcgGCGCGcacGCCGGa -3'
miRNA:   3'- aGGAGU-------UCUGCGa------GuaCGCGC---CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 121562 0.71 0.557731
Target:  5'- cUCCUCGAG-CGCggcgCGcGCGCGGacgccaCCGGg -3'
miRNA:   3'- -AGGAGUUCuGCGa---GUaCGCGCC------GGCC- -5'
25509 5' -57.5 NC_005337.1 + 120601 0.68 0.757565
Target:  5'- gCCUC---GCGCUCAUG-GaggaGGCCGGc -3'
miRNA:   3'- aGGAGuucUGCGAGUACgCg---CCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 120558 0.66 0.853361
Target:  5'- gUCCUCGcGGA-GCUCggugGUGUGCGGCaaccCGGc -3'
miRNA:   3'- -AGGAGU-UCUgCGAG----UACGCGCCG----GCC- -5'
25509 5' -57.5 NC_005337.1 + 120454 0.73 0.461537
Target:  5'- cCCUgCGGGgcGCGCUCGaGCGCGcGCUGGa -3'
miRNA:   3'- aGGA-GUUC--UGCGAGUaCGCGC-CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 118088 0.73 0.452385
Target:  5'- cUCCUCGGGGCuCUCcgGCGCGuGgUGGa -3'
miRNA:   3'- -AGGAGUUCUGcGAGuaCGCGC-CgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.