miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25509 5' -57.5 NC_005337.1 + 44625 0.67 0.766992
Target:  5'- aCCUgAAGGCGCugcuccugaUCGUGCGCcGCagCGGg -3'
miRNA:   3'- aGGAgUUCUGCG---------AGUACGCGcCG--GCC- -5'
25509 5' -57.5 NC_005337.1 + 44703 0.67 0.785484
Target:  5'- uUCCgguGGuguGCUCGacGUGCGGCCGGg -3'
miRNA:   3'- -AGGaguUCug-CGAGUa-CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 45040 0.66 0.837433
Target:  5'- gCCgCAcGAUGCUCcgcaagcuggGCGcCGGCCGGc -3'
miRNA:   3'- aGGaGUuCUGCGAGua--------CGC-GCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 45401 0.69 0.699025
Target:  5'- cCCggugcuGACGCUCcacUGCGCGGCguCGGa -3'
miRNA:   3'- aGGaguu--CUGCGAGu--ACGCGCCG--GCC- -5'
25509 5' -57.5 NC_005337.1 + 46008 0.68 0.728664
Target:  5'- gUCCUCcgcGGCGCccgCcgGCGCG-CCGGc -3'
miRNA:   3'- -AGGAGuu-CUGCGa--GuaCGCGCcGGCC- -5'
25509 5' -57.5 NC_005337.1 + 47614 0.7 0.638484
Target:  5'- aCUUCGAGGCGgaCAacaagcgucUGCGCGccaccGCCGGg -3'
miRNA:   3'- aGGAGUUCUGCgaGU---------ACGCGC-----CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 49170 0.68 0.748029
Target:  5'- gCgUCAagaacgugcAGACGCUCGUGCgguacGUGGCCa- -3'
miRNA:   3'- aGgAGU---------UCUGCGAGUACG-----CGCCGGcc -5'
25509 5' -57.5 NC_005337.1 + 50223 0.71 0.577745
Target:  5'- gCCUCcccgAGGGCG-UCGUGCGCGccuccGCCGGu -3'
miRNA:   3'- aGGAG----UUCUGCgAGUACGCGC-----CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 51518 0.66 0.853361
Target:  5'- aUCaUCAuGGCGCUCuucgGCGUGcggcuGCCGGg -3'
miRNA:   3'- -AGgAGUuCUGCGAGua--CGCGC-----CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 56113 0.72 0.504829
Target:  5'- -gCUCGAGGCGCacggcaucgccagCGUGCGCGGCgugcagCGGg -3'
miRNA:   3'- agGAGUUCUGCGa------------GUACGCGCCG------GCC- -5'
25509 5' -57.5 NC_005337.1 + 58108 0.68 0.708972
Target:  5'- uUCUUCAgcaAGACGC-CggGCGUGGggaCCGGg -3'
miRNA:   3'- -AGGAGU---UCUGCGaGuaCGCGCC---GGCC- -5'
25509 5' -57.5 NC_005337.1 + 59339 0.72 0.489561
Target:  5'- aCUUCgAGGACGaccaCUgGUGCGCGGCCGc -3'
miRNA:   3'- aGGAG-UUCUGC----GAgUACGCGCCGGCc -5'
25509 5' -57.5 NC_005337.1 + 64894 0.67 0.776301
Target:  5'- gCCUCAcagAGGCGgaCcugGCGCuagcGGCCGGc -3'
miRNA:   3'- aGGAGU---UCUGCgaGua-CGCG----CCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 65971 0.69 0.657758
Target:  5'- cUCCUCGGGcACGCgCGUccacgccGC-CGGCCGGc -3'
miRNA:   3'- -AGGAGUUC-UGCGaGUA-------CGcGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 66019 0.71 0.577745
Target:  5'- gUCCUC--GACGCUCGcccacGCGCcGGCCGc -3'
miRNA:   3'- -AGGAGuuCUGCGAGUa----CGCG-CCGGCc -5'
25509 5' -57.5 NC_005337.1 + 66523 0.69 0.667876
Target:  5'- gCCggcCGAGACGCUgGagcUGCGCGccgcgccGCCGGu -3'
miRNA:   3'- aGGa--GUUCUGCGAgU---ACGCGC-------CGGCC- -5'
25509 5' -57.5 NC_005337.1 + 67447 0.69 0.678974
Target:  5'- aCUUCGAGACGgugaUCcgGCGCaGCCGc -3'
miRNA:   3'- aGGAGUUCUGCg---AGuaCGCGcCGGCc -5'
25509 5' -57.5 NC_005337.1 + 68224 0.66 0.82077
Target:  5'- gCCUgAcGGCGUcCGgguuccggaGCGCGGCCGGc -3'
miRNA:   3'- aGGAgUuCUGCGaGUa--------CGCGCCGGCC- -5'
25509 5' -57.5 NC_005337.1 + 70146 0.72 0.518355
Target:  5'- cCCUucCAGGACGC-CAUGCGCcgcgugagccaGGCCGu -3'
miRNA:   3'- aGGA--GUUCUGCGaGUACGCG-----------CCGGCc -5'
25509 5' -57.5 NC_005337.1 + 70789 0.68 0.718855
Target:  5'- -aCUC-GGAgGC-CAUGCgGCGGCUGGu -3'
miRNA:   3'- agGAGuUCUgCGaGUACG-CGCCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.