Results 41 - 60 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 89046 | 0.79 | 0.119139 |
Target: 5'- -uGCGCGCGCUGCUG-ACCACCaugacgcgGGCg -3' miRNA: 3'- ccCGCGUGCGACGACgUGGUGGa-------CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 23173 | 0.79 | 0.110302 |
Target: 5'- -cGCGUggagGCGCUGCUGgACgGCCUGGCg -3' miRNA: 3'- ccCGCG----UGCGACGACgUGgUGGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 68205 | 0.8 | 0.096926 |
Target: 5'- gGGGCGC-CGCUGCggGC-CCGCCUgacGGCg -3' miRNA: 3'- -CCCGCGuGCGACGa-CGuGGUGGA---CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 128053 | 0.8 | 0.094442 |
Target: 5'- cGGgGaCACGCUGCUGCACCACCacauGCa -3' miRNA: 3'- cCCgC-GUGCGACGACGUGGUGGac--CG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 15480 | 0.81 | 0.092018 |
Target: 5'- cGGCGCGCGCgGCacgacgGCGCCGCCgccGGCg -3' miRNA: 3'- cCCGCGUGCGaCGa-----CGUGGUGGa--CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 88039 | 0.74 | 0.26219 |
Target: 5'- cGGCGCACGUgcacggggucgUGCuggaUGUACUGCUUGGCg -3' miRNA: 3'- cCCGCGUGCG-----------ACG----ACGUGGUGGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 22369 | 0.73 | 0.268377 |
Target: 5'- gGGGCGCgugaacgccaacACGCUuaaGCucgUGUACCGCCUGGa -3' miRNA: 3'- -CCCGCG------------UGCGA---CG---ACGUGGUGGACCg -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 100278 | 0.71 | 0.351139 |
Target: 5'- -cGCGCGCGCaagaggcgguccgUGC-GCACCuuCCUGGCc -3' miRNA: 3'- ccCGCGUGCG-------------ACGaCGUGGu-GGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 67975 | 0.72 | 0.33456 |
Target: 5'- cGGCGCucACGCgGUccagggucggcgcgUGCGCCACCaGGCu -3' miRNA: 3'- cCCGCG--UGCGaCG--------------ACGUGGUGGaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 36456 | 0.72 | 0.332344 |
Target: 5'- cGGGCGgACGCacggucuucaccaccUGCcGCACgGCCUuGGCc -3' miRNA: 3'- -CCCGCgUGCG---------------ACGaCGUGgUGGA-CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 20322 | 0.72 | 0.329406 |
Target: 5'- cGGCGUugcGCGCUGCcuucuUGCugCAUccgCUGGCg -3' miRNA: 3'- cCCGCG---UGCGACG-----ACGugGUG---GACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 69916 | 0.72 | 0.328675 |
Target: 5'- -uGCGCGCGCUggacacgGCUGUguACCGCCgcGGCg -3' miRNA: 3'- ccCGCGUGCGA-------CGACG--UGGUGGa-CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 57577 | 0.72 | 0.328675 |
Target: 5'- cGGCGaccacguggaguaCACGCUGCUGCugCGCUucgUGGa -3' miRNA: 3'- cCCGC-------------GUGCGACGACGugGUGG---ACCg -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 121862 | 0.72 | 0.307985 |
Target: 5'- uGGGCGCcaacguggaaACGCUGCgGCugUugCUcgcGGCa -3' miRNA: 3'- -CCCGCG----------UGCGACGaCGugGugGA---CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 95189 | 0.72 | 0.307985 |
Target: 5'- -aGCGCGaGC-GCUGCACguCCUGGCu -3' miRNA: 3'- ccCGCGUgCGaCGACGUGguGGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 29194 | 0.73 | 0.299039 |
Target: 5'- cGGCGCccgugccgaaggagGCGCUGCgcaGCGCCGCgCggccgGGCg -3' miRNA: 3'- cCCGCG--------------UGCGACGa--CGUGGUG-Ga----CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 121573 | 0.73 | 0.294306 |
Target: 5'- cGGCGCGCGC-GCgGaCGCCACCgGGa -3' miRNA: 3'- cCCGCGUGCGaCGaC-GUGGUGGaCCg -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 133150 | 0.73 | 0.294306 |
Target: 5'- uGGuCGCGCGCgUGCUGCGgCugCUcccGGCg -3' miRNA: 3'- cCC-GCGUGCG-ACGACGUgGugGA---CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 76557 | 0.73 | 0.287645 |
Target: 5'- aGGCGCA-GUUGg-GCACCACCUccGGCg -3' miRNA: 3'- cCCGCGUgCGACgaCGUGGUGGA--CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 65592 | 0.73 | 0.286986 |
Target: 5'- cGGGCGCgcaggccaagagcGCGCUGCUGCACgCGCUc--- -3' miRNA: 3'- -CCCGCG-------------UGCGACGACGUG-GUGGaccg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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