miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 121862 0.72 0.307985
Target:  5'- uGGGCGCcaacguggaaACGCUGCgGCugUugCUcgcGGCa -3'
miRNA:   3'- -CCCGCG----------UGCGACGaCGugGugGA---CCG- -5'
25510 3' -60.7 NC_005337.1 + 67646 0.72 0.322146
Target:  5'- uGGuCGCGCGCgUGCUccaGCACCACCgagugcUGGUu -3'
miRNA:   3'- cCC-GCGUGCG-ACGA---CGUGGUGG------ACCG- -5'
25510 3' -60.7 NC_005337.1 + 57577 0.72 0.328675
Target:  5'- cGGCGaccacguggaguaCACGCUGCUGCugCGCUucgUGGa -3'
miRNA:   3'- cCCGC-------------GUGCGACGACGugGUGG---ACCg -5'
25510 3' -60.7 NC_005337.1 + 69916 0.72 0.328675
Target:  5'- -uGCGCGCGCUggacacgGCUGUguACCGCCgcGGCg -3'
miRNA:   3'- ccCGCGUGCGA-------CGACG--UGGUGGa-CCG- -5'
25510 3' -60.7 NC_005337.1 + 20322 0.72 0.329406
Target:  5'- cGGCGUugcGCGCUGCcuucuUGCugCAUccgCUGGCg -3'
miRNA:   3'- cCCGCG---UGCGACG-----ACGugGUG---GACCG- -5'
25510 3' -60.7 NC_005337.1 + 36456 0.72 0.332344
Target:  5'- cGGGCGgACGCacggucuucaccaccUGCcGCACgGCCUuGGCc -3'
miRNA:   3'- -CCCGCgUGCG---------------ACGaCGUGgUGGA-CCG- -5'
25510 3' -60.7 NC_005337.1 + 67975 0.72 0.33456
Target:  5'- cGGCGCucACGCgGUccagggucggcgcgUGCGCCACCaGGCu -3'
miRNA:   3'- cCCGCG--UGCGaCG--------------ACGUGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 24459 0.72 0.336787
Target:  5'- cGGGCaGUACGUcacGCUGCACgaccucgacuacUACCUGGUg -3'
miRNA:   3'- -CCCG-CGUGCGa--CGACGUG------------GUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 11315 0.72 0.342024
Target:  5'- cGGGCGUugGC-GCagagguccgucccaUGCGCCACCaccgGGUu -3'
miRNA:   3'- -CCCGCGugCGaCG--------------ACGUGGUGGa---CCG- -5'
25510 3' -60.7 NC_005337.1 + 105065 0.72 0.344287
Target:  5'- -cGCGCgGCGCUGCgcaGCGCCuCCUucGGCa -3'
miRNA:   3'- ccCGCG-UGCGACGa--CGUGGuGGA--CCG- -5'
25510 3' -60.7 NC_005337.1 + 100278 0.71 0.351139
Target:  5'- -cGCGCGCGCaagaggcgguccgUGC-GCACCuuCCUGGCc -3'
miRNA:   3'- ccCGCGUGCG-------------ACGaCGUGGu-GGACCG- -5'
25510 3' -60.7 NC_005337.1 + 91194 0.71 0.351906
Target:  5'- cGGGCGC-CGCgaUGCggacgggcGCGCCGCCggUGGUc -3'
miRNA:   3'- -CCCGCGuGCG--ACGa-------CGUGGUGG--ACCG- -5'
25510 3' -60.7 NC_005337.1 + 125145 0.71 0.351906
Target:  5'- cGGCGaGCGC-GCUGUACCgguACCUGGa -3'
miRNA:   3'- cCCGCgUGCGaCGACGUGG---UGGACCg -5'
25510 3' -60.7 NC_005337.1 + 115206 0.71 0.351906
Target:  5'- cGGUGC-CGCUGCggGCGCUGCUgaagaugGGCg -3'
miRNA:   3'- cCCGCGuGCGACGa-CGUGGUGGa------CCG- -5'
25510 3' -60.7 NC_005337.1 + 54110 0.71 0.351906
Target:  5'- cGGGCGCugcuacguggaGCGCgacgGCcGCGCCGCgcgcaUGGCu -3'
miRNA:   3'- -CCCGCG-----------UGCGa---CGaCGUGGUGg----ACCG- -5'
25510 3' -60.7 NC_005337.1 + 132191 0.71 0.354988
Target:  5'- cGGcGCGCGCcgacaccgugcgccuGCUGCUGCGgCACggGGCc -3'
miRNA:   3'- -CC-CGCGUG---------------CGACGACGUgGUGgaCCG- -5'
25510 3' -60.7 NC_005337.1 + 126434 0.71 0.359645
Target:  5'- cGGCGCGCGUgcGCgUGUACCACC-GcGCg -3'
miRNA:   3'- cCCGCGUGCGa-CG-ACGUGGUGGaC-CG- -5'
25510 3' -60.7 NC_005337.1 + 50119 0.71 0.367501
Target:  5'- cGGGCGCuCGCUG--GCGCgCAUCUGcGCg -3'
miRNA:   3'- -CCCGCGuGCGACgaCGUG-GUGGAC-CG- -5'
25510 3' -60.7 NC_005337.1 + 45424 0.71 0.367501
Target:  5'- cGGCGUcggaGCGCaGCUGCAUCACgUacaGGCg -3'
miRNA:   3'- cCCGCG----UGCGaCGACGUGGUGgA---CCG- -5'
25510 3' -60.7 NC_005337.1 + 50764 0.71 0.370677
Target:  5'- cGGGCGCACGCgUGCgguucccgcggucccUGCucucgcuguuCCACgUGGUg -3'
miRNA:   3'- -CCCGCGUGCG-ACG---------------ACGu---------GGUGgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.