miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 73320 0.74 0.250164
Target:  5'- uGGGCGCGCGCcccaugcgcaUGCcgGCGCgGCagUGGCg -3'
miRNA:   3'- -CCCGCGUGCG----------ACGa-CGUGgUGg-ACCG- -5'
25510 3' -60.7 NC_005337.1 + 125868 0.74 0.25432
Target:  5'- cGGuGCGgacauccugcacaaCACGgUGCUGCACaGCCUGGCc -3'
miRNA:   3'- -CC-CGC--------------GUGCgACGACGUGgUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 128263 0.74 0.25432
Target:  5'- uGGGCGgACGCcGCUGCACgcggcggucugcaaCgcgcgcGCCUGGCg -3'
miRNA:   3'- -CCCGCgUGCGaCGACGUG--------------G------UGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 131897 0.74 0.256119
Target:  5'- cGGGCGCgcacguggACGCggucgaccggUGCUGCGgCGCgCUGGCc -3'
miRNA:   3'- -CCCGCG--------UGCG----------ACGACGUgGUG-GACCG- -5'
25510 3' -60.7 NC_005337.1 + 123831 0.74 0.26219
Target:  5'- uGGCGCACGacgcGC-GCACCGCCgcgcaGGCg -3'
miRNA:   3'- cCCGCGUGCga--CGaCGUGGUGGa----CCG- -5'
25510 3' -60.7 NC_005337.1 + 88039 0.74 0.26219
Target:  5'- cGGCGCACGUgcacggggucgUGCuggaUGUACUGCUUGGCg -3'
miRNA:   3'- cCCGCGUGCG-----------ACG----ACGUGGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 22369 0.73 0.268377
Target:  5'- gGGGCGCgugaacgccaacACGCUuaaGCucgUGUACCGCCUGGa -3'
miRNA:   3'- -CCCGCG------------UGCGA---CG---ACGUGGUGGACCg -5'
25510 3' -60.7 NC_005337.1 + 5992 0.73 0.268377
Target:  5'- aGGCGCGCGC-GUUGCagACCGCCgcgugcagcGGCg -3'
miRNA:   3'- cCCGCGUGCGaCGACG--UGGUGGa--------CCG- -5'
25510 3' -60.7 NC_005337.1 + 104686 0.73 0.272778
Target:  5'- uGGCGUccgcgucggacaccGCcgaggaGCUGCUGUGCCACCUGaGCa -3'
miRNA:   3'- cCCGCG--------------UG------CGACGACGUGGUGGAC-CG- -5'
25510 3' -60.7 NC_005337.1 + 66908 0.73 0.283706
Target:  5'- cGGCGCACGaUguacucggucauggGCUGCGCCAUCguggagGGCg -3'
miRNA:   3'- cCCGCGUGC-Ga-------------CGACGUGGUGGa-----CCG- -5'
25510 3' -60.7 NC_005337.1 + 65592 0.73 0.286986
Target:  5'- cGGGCGCgcaggccaagagcGCGCUGCUGCACgCGCUc--- -3'
miRNA:   3'- -CCCGCG-------------UGCGACGACGUG-GUGGaccg -5'
25510 3' -60.7 NC_005337.1 + 76557 0.73 0.287645
Target:  5'- aGGCGCA-GUUGg-GCACCACCUccGGCg -3'
miRNA:   3'- cCCGCGUgCGACgaCGUGGUGGA--CCG- -5'
25510 3' -60.7 NC_005337.1 + 108287 0.73 0.287645
Target:  5'- aGGGCaucaucccCAUGCUGCUGCGCUccuuCCUGGa -3'
miRNA:   3'- -CCCGc-------GUGCGACGACGUGGu---GGACCg -5'
25510 3' -60.7 NC_005337.1 + 59024 0.73 0.291627
Target:  5'- uGGGUGCGCGCgGCcuucaccgacuucGCGCCG-CUGGCg -3'
miRNA:   3'- -CCCGCGUGCGaCGa------------CGUGGUgGACCG- -5'
25510 3' -60.7 NC_005337.1 + 133150 0.73 0.294306
Target:  5'- uGGuCGCGCGCgUGCUGCGgCugCUcccGGCg -3'
miRNA:   3'- cCC-GCGUGCG-ACGACGUgGugGA---CCG- -5'
25510 3' -60.7 NC_005337.1 + 121573 0.73 0.294306
Target:  5'- cGGCGCGCGC-GCgGaCGCCACCgGGa -3'
miRNA:   3'- cCCGCGUGCGaCGaC-GUGGUGGaCCg -5'
25510 3' -60.7 NC_005337.1 + 133150 0.73 0.294306
Target:  5'- uGGuCGCGCGCgUGCUGCGgCugCUcccGGCg -3'
miRNA:   3'- cCC-GCGUGCG-ACGACGUgGugGA---CCG- -5'
25510 3' -60.7 NC_005337.1 + 29194 0.73 0.299039
Target:  5'- cGGCGCccgugccgaaggagGCGCUGCgcaGCGCCGCgCggccgGGCg -3'
miRNA:   3'- cCCGCG--------------UGCGACGa--CGUGGUG-Ga----CCG- -5'
25510 3' -60.7 NC_005337.1 + 28742 0.73 0.301086
Target:  5'- cGGGUGgaCGCGCUGCUGaaGCC-CCUGGa -3'
miRNA:   3'- -CCCGC--GUGCGACGACg-UGGuGGACCg -5'
25510 3' -60.7 NC_005337.1 + 95189 0.72 0.307985
Target:  5'- -aGCGCGaGC-GCUGCACguCCUGGCu -3'
miRNA:   3'- ccCGCGUgCGaCGACGUGguGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.