Results 1 - 20 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 127407 | 1.14 | 0.000409 |
Target: 5'- cGGGCGCACGCUGCUGCACCACCUGGCg -3' miRNA: 3'- -CCCGCGUGCGACGACGUGGUGGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 21661 | 0.81 | 0.085094 |
Target: 5'- uGGgGCACGUgcucgcGCUGCACUACCUGGUc -3' miRNA: 3'- cCCgCGUGCGa-----CGACGUGGUGGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 39495 | 0.81 | 0.089652 |
Target: 5'- -cGCGCGCGCUGCUGCuggugaaccCCACCgcgGGCc -3' miRNA: 3'- ccCGCGUGCGACGACGu--------GGUGGa--CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 15480 | 0.81 | 0.092018 |
Target: 5'- cGGCGCGCGCgGCacgacgGCGCCGCCgccGGCg -3' miRNA: 3'- cCCGCGUGCGaCGa-----CGUGGUGGa--CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 128053 | 0.8 | 0.094442 |
Target: 5'- cGGgGaCACGCUGCUGCACCACCacauGCa -3' miRNA: 3'- cCCgC-GUGCGACGACGUGGUGGac--CG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 68205 | 0.8 | 0.096926 |
Target: 5'- gGGGCGC-CGCUGCggGC-CCGCCUgacGGCg -3' miRNA: 3'- -CCCGCGuGCGACGa-CGuGGUGGA---CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 23173 | 0.79 | 0.110302 |
Target: 5'- -cGCGUggagGCGCUGCUGgACgGCCUGGCg -3' miRNA: 3'- ccCGCG----UGCGACGACgUGgUGGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 89046 | 0.79 | 0.119139 |
Target: 5'- -uGCGCGCGCUGCUG-ACCACCaugacgcgGGCg -3' miRNA: 3'- ccCGCGUGCGACGACgUGGUGGa-------CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 3386 | 0.79 | 0.119139 |
Target: 5'- uGGGCGagaaGCGC-GCgUGCGCCAUCUGGUa -3' miRNA: 3'- -CCCGCg---UGCGaCG-ACGUGGUGGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 128796 | 0.78 | 0.138818 |
Target: 5'- cGGGCGUGCGCaccgagcggUGCcGCACCACCgugUGGUa -3' miRNA: 3'- -CCCGCGUGCG---------ACGaCGUGGUGG---ACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 97168 | 0.78 | 0.142375 |
Target: 5'- cGGCGCcucgGCGCUGCUGCGCU-CC-GGCg -3' miRNA: 3'- cCCGCG----UGCGACGACGUGGuGGaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 100405 | 0.78 | 0.142375 |
Target: 5'- cGGGCGCGCGCUacgagaucgacGC-GCGCCACgUGGa -3' miRNA: 3'- -CCCGCGUGCGA-----------CGaCGUGGUGgACCg -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 68491 | 0.77 | 0.153552 |
Target: 5'- cGGGCGcCGCGCUGCUG-GCgGCCgugGGUg -3' miRNA: 3'- -CCCGC-GUGCGACGACgUGgUGGa--CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 110952 | 0.76 | 0.182773 |
Target: 5'- uGGGCGUGCGCaGCUGCGCgGCC--GCg -3' miRNA: 3'- -CCCGCGUGCGaCGACGUGgUGGacCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 42553 | 0.75 | 0.2016 |
Target: 5'- cGGGCGCugGUgcgGCUGCggcuggagGCCGCggGGCu -3' miRNA: 3'- -CCCGCGugCGa--CGACG--------UGGUGgaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 59257 | 0.75 | 0.2016 |
Target: 5'- -uGCGaguCGgUGCUGCGCCACCgGGCg -3' miRNA: 3'- ccCGCgu-GCgACGACGUGGUGGaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 116657 | 0.75 | 0.205562 |
Target: 5'- cGGGCGCugGaguccuacauggUGCUGCAgCCGCCcgcgGGCg -3' miRNA: 3'- -CCCGCGugCg-----------ACGACGU-GGUGGa---CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 57287 | 0.75 | 0.206563 |
Target: 5'- cGGCGCGCGCgGCUGCGgCGCCgcucucGGa -3' miRNA: 3'- cCCGCGUGCGaCGACGUgGUGGa-----CCg -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 51715 | 0.75 | 0.222088 |
Target: 5'- cGGCGaCGCGCUGaUGaucgaGCUGCCUGGCg -3' miRNA: 3'- cCCGC-GUGCGACgACg----UGGUGGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 130786 | 0.74 | 0.249575 |
Target: 5'- uGGGCGCcgccgguGCgGCUGCUGCGCUuCUUcGGCa -3' miRNA: 3'- -CCCGCG-------UG-CGACGACGUGGuGGA-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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