miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 29194 0.73 0.299039
Target:  5'- cGGCGCccgugccgaaggagGCGCUGCgcaGCGCCGCgCggccgGGCg -3'
miRNA:   3'- cCCGCG--------------UGCGACGa--CGUGGUG-Ga----CCG- -5'
25510 3' -60.7 NC_005337.1 + 125868 0.74 0.25432
Target:  5'- cGGuGCGgacauccugcacaaCACGgUGCUGCACaGCCUGGCc -3'
miRNA:   3'- -CC-CGC--------------GUGCgACGACGUGgUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 128263 0.74 0.25432
Target:  5'- uGGGCGgACGCcGCUGCACgcggcggucugcaaCgcgcgcGCCUGGCg -3'
miRNA:   3'- -CCCGCgUGCGaCGACGUG--------------G------UGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 88039 0.74 0.26219
Target:  5'- cGGCGCACGUgcacggggucgUGCuggaUGUACUGCUUGGCg -3'
miRNA:   3'- cCCGCGUGCG-----------ACG----ACGUGGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 22369 0.73 0.268377
Target:  5'- gGGGCGCgugaacgccaacACGCUuaaGCucgUGUACCGCCUGGa -3'
miRNA:   3'- -CCCGCG------------UGCGA---CG---ACGUGGUGGACCg -5'
25510 3' -60.7 NC_005337.1 + 65592 0.73 0.286986
Target:  5'- cGGGCGCgcaggccaagagcGCGCUGCUGCACgCGCUc--- -3'
miRNA:   3'- -CCCGCG-------------UGCGACGACGUG-GUGGaccg -5'
25510 3' -60.7 NC_005337.1 + 76557 0.73 0.287645
Target:  5'- aGGCGCA-GUUGg-GCACCACCUccGGCg -3'
miRNA:   3'- cCCGCGUgCGACgaCGUGGUGGA--CCG- -5'
25510 3' -60.7 NC_005337.1 + 133150 0.73 0.294306
Target:  5'- uGGuCGCGCGCgUGCUGCGgCugCUcccGGCg -3'
miRNA:   3'- cCC-GCGUGCG-ACGACGUgGugGA---CCG- -5'
25510 3' -60.7 NC_005337.1 + 121573 0.73 0.294306
Target:  5'- cGGCGCGCGC-GCgGaCGCCACCgGGa -3'
miRNA:   3'- cCCGCGUGCGaCGaC-GUGGUGGaCCg -5'
25510 3' -60.7 NC_005337.1 + 130786 0.74 0.249575
Target:  5'- uGGGCGCcgccgguGCgGCUGCUGCGCUuCUUcGGCa -3'
miRNA:   3'- -CCCGCG-------UG-CGACGACGUGGuGGA-CCG- -5'
25510 3' -60.7 NC_005337.1 + 51715 0.75 0.222088
Target:  5'- cGGCGaCGCGCUGaUGaucgaGCUGCCUGGCg -3'
miRNA:   3'- cCCGC-GUGCGACgACg----UGGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 42553 0.75 0.2016
Target:  5'- cGGGCGCugGUgcgGCUGCggcuggagGCCGCggGGCu -3'
miRNA:   3'- -CCCGCGugCGa--CGACG--------UGGUGgaCCG- -5'
25510 3' -60.7 NC_005337.1 + 15480 0.81 0.092018
Target:  5'- cGGCGCGCGCgGCacgacgGCGCCGCCgccGGCg -3'
miRNA:   3'- cCCGCGUGCGaCGa-----CGUGGUGGa--CCG- -5'
25510 3' -60.7 NC_005337.1 + 128053 0.8 0.094442
Target:  5'- cGGgGaCACGCUGCUGCACCACCacauGCa -3'
miRNA:   3'- cCCgC-GUGCGACGACGUGGUGGac--CG- -5'
25510 3' -60.7 NC_005337.1 + 68205 0.8 0.096926
Target:  5'- gGGGCGC-CGCUGCggGC-CCGCCUgacGGCg -3'
miRNA:   3'- -CCCGCGuGCGACGa-CGuGGUGGA---CCG- -5'
25510 3' -60.7 NC_005337.1 + 23173 0.79 0.110302
Target:  5'- -cGCGUggagGCGCUGCUGgACgGCCUGGCg -3'
miRNA:   3'- ccCGCG----UGCGACGACgUGgUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 89046 0.79 0.119139
Target:  5'- -uGCGCGCGCUGCUG-ACCACCaugacgcgGGCg -3'
miRNA:   3'- ccCGCGUGCGACGACgUGGUGGa-------CCG- -5'
25510 3' -60.7 NC_005337.1 + 97168 0.78 0.142375
Target:  5'- cGGCGCcucgGCGCUGCUGCGCU-CC-GGCg -3'
miRNA:   3'- cCCGCG----UGCGACGACGUGGuGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 68491 0.77 0.153552
Target:  5'- cGGGCGcCGCGCUGCUG-GCgGCCgugGGUg -3'
miRNA:   3'- -CCCGC-GUGCGACGACgUGgUGGa--CCG- -5'
25510 3' -60.7 NC_005337.1 + 59257 0.75 0.2016
Target:  5'- -uGCGaguCGgUGCUGCGCCACCgGGCg -3'
miRNA:   3'- ccCGCgu-GCgACGACGUGGUGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.