miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 526 0.71 0.375475
Target:  5'- cGGCGCagGCGCUccaGCUGCcggcgccacuccGCCACC-GGCc -3'
miRNA:   3'- cCCGCG--UGCGA---CGACG------------UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 526 0.71 0.375475
Target:  5'- cGGCGCagGCGCUccaGCUGCcggcgccacuccGCCACC-GGCc -3'
miRNA:   3'- cCCGCG--UGCGA---CGACG------------UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 570 0.66 0.676452
Target:  5'- -cGCGUACGCcGCgGCcgcgcggaaGCCGCC-GGCg -3'
miRNA:   3'- ccCGCGUGCGaCGaCG---------UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 570 0.66 0.676452
Target:  5'- -cGCGUACGCcGCgGCcgcgcggaaGCCGCC-GGCg -3'
miRNA:   3'- ccCGCGUGCGaCGaCG---------UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 770 0.66 0.64641
Target:  5'- cGGCGgcCAugUGCUGC-GCGCCGCCgacgacgaGGCa -3'
miRNA:   3'- cCCGC--GU--GCGACGaCGUGGUGGa-------CCG- -5'
25510 3' -60.7 NC_005337.1 + 770 0.66 0.64641
Target:  5'- cGGCGgcCAugUGCUGC-GCGCCGCCgacgacgaGGCa -3'
miRNA:   3'- cCCGC--GU--GCGACGaCGUGGUGGa-------CCG- -5'
25510 3' -60.7 NC_005337.1 + 854 0.66 0.636363
Target:  5'- aGGCgGCGgGCaGCgcggGCGCgGCCgGGCg -3'
miRNA:   3'- cCCG-CGUgCGaCGa---CGUGgUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 854 0.66 0.636363
Target:  5'- aGGCgGCGgGCaGCgcggGCGCgGCCgGGCg -3'
miRNA:   3'- cCCG-CGUgCGaCGa---CGUGgUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 993 0.69 0.461331
Target:  5'- cGGCGCGCGgaggGCggGCGUCGCCUGGa -3'
miRNA:   3'- cCCGCGUGCga--CGa-CGUGGUGGACCg -5'
25510 3' -60.7 NC_005337.1 + 993 0.69 0.461331
Target:  5'- cGGCGCGCGgaggGCggGCGUCGCCUGGa -3'
miRNA:   3'- cCCGCGUGCga--CGa-CGUGGUGGACCg -5'
25510 3' -60.7 NC_005337.1 + 1156 0.66 0.686407
Target:  5'- gGGGaGCGCGCcgGCggagcgGC-CCGCUaGGCg -3'
miRNA:   3'- -CCCgCGUGCGa-CGa-----CGuGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 1215 0.69 0.510827
Target:  5'- cGGCGC-CGCguacGCggacgaagcuacgaaUGCGCCugugauaGCCUGGCa -3'
miRNA:   3'- cCCGCGuGCGa---CG---------------ACGUGG-------UGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 1512 0.67 0.606234
Target:  5'- cGGCGCGCGCcagcGCgucCGCCACUUcgugugcgGGCg -3'
miRNA:   3'- cCCGCGUGCGa---CGac-GUGGUGGA--------CCG- -5'
25510 3' -60.7 NC_005337.1 + 2083 0.69 0.494693
Target:  5'- aGGCGCACGgUGUcgGCGCgCGCCgcgagcccggucaGGCa -3'
miRNA:   3'- cCCGCGUGCgACGa-CGUG-GUGGa------------CCG- -5'
25510 3' -60.7 NC_005337.1 + 2192 0.69 0.470482
Target:  5'- cGGCGCAgGCgGCggacgcggGCGCgGCCcgGGCc -3'
miRNA:   3'- cCCGCGUgCGaCGa-------CGUGgUGGa-CCG- -5'
25510 3' -60.7 NC_005337.1 + 3306 0.67 0.576271
Target:  5'- -aGCGCGCGUUGC-GCACguCCacGGCc -3'
miRNA:   3'- ccCGCGUGCGACGaCGUGguGGa-CCG- -5'
25510 3' -60.7 NC_005337.1 + 3386 0.79 0.119139
Target:  5'- uGGGCGagaaGCGC-GCgUGCGCCAUCUGGUa -3'
miRNA:   3'- -CCCGCg---UGCGaCG-ACGUGGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 4364 0.66 0.686407
Target:  5'- aGGCG-GCGgUGUUGUugUACCcGGCc -3'
miRNA:   3'- cCCGCgUGCgACGACGugGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 5402 0.71 0.400087
Target:  5'- uGGGUGCGCaGCaGCUGCGCaguucgGCCgUGGUc -3'
miRNA:   3'- -CCCGCGUG-CGaCGACGUGg-----UGG-ACCG- -5'
25510 3' -60.7 NC_005337.1 + 5564 0.66 0.676452
Target:  5'- gGGGaacgcaGCGCGCUcgcagaucaGCUGCGCUAUUcGGUc -3'
miRNA:   3'- -CCCg-----CGUGCGA---------CGACGUGGUGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.