miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 133744 0.67 0.626313
Target:  5'- uGGCGCcgGCaGCUGgaGCGCCugCgccGCg -3'
miRNA:   3'- cCCGCG--UG-CGACgaCGUGGugGac-CG- -5'
25510 3' -60.7 NC_005337.1 + 133744 0.67 0.626313
Target:  5'- uGGCGCcgGCaGCUGgaGCGCCugCgccGCg -3'
miRNA:   3'- cCCGCG--UG-CGACgaCGUGGugGac-CG- -5'
25510 3' -60.7 NC_005337.1 + 133608 0.68 0.566351
Target:  5'- aGGGCcCGCuGCUGCUGCAggaggUCACCgucGCc -3'
miRNA:   3'- -CCCGcGUG-CGACGACGU-----GGUGGac-CG- -5'
25510 3' -60.7 NC_005337.1 + 133608 0.68 0.566351
Target:  5'- aGGGCcCGCuGCUGCUGCAggaggUCACCgucGCc -3'
miRNA:   3'- -CCCGcGUG-CGACGACGU-----GGUGGac-CG- -5'
25510 3' -60.7 NC_005337.1 + 133539 0.67 0.626313
Target:  5'- cGGGCGcCGCGCUcucGCccgcGUACCccgcgGCCgcgGGCg -3'
miRNA:   3'- -CCCGC-GUGCGA---CGa---CGUGG-----UGGa--CCG- -5'
25510 3' -60.7 NC_005337.1 + 133539 0.67 0.626313
Target:  5'- cGGGCGcCGCGCUcucGCccgcGUACCccgcgGCCgcgGGCg -3'
miRNA:   3'- -CCCGC-GUGCGA---CGa---CGUGG-----UGGa--CCG- -5'
25510 3' -60.7 NC_005337.1 + 133423 0.66 0.686407
Target:  5'- -cGCGCccGCGCUGCc-CGCCGCCUucgucgagcccgGGCc -3'
miRNA:   3'- ccCGCG--UGCGACGacGUGGUGGA------------CCG- -5'
25510 3' -60.7 NC_005337.1 + 133423 0.66 0.686407
Target:  5'- -cGCGCccGCGCUGCc-CGCCGCCUucgucgagcccgGGCc -3'
miRNA:   3'- ccCGCG--UGCGACGacGUGGUGGA------------CCG- -5'
25510 3' -60.7 NC_005337.1 + 133150 0.73 0.294306
Target:  5'- uGGuCGCGCGCgUGCUGCGgCugCUcccGGCg -3'
miRNA:   3'- cCC-GCGUGCG-ACGACGUgGugGA---CCG- -5'
25510 3' -60.7 NC_005337.1 + 133150 0.73 0.294306
Target:  5'- uGGuCGCGCGCgUGCUGCGgCugCUcccGGCg -3'
miRNA:   3'- cCC-GCGUGCG-ACGACGUgGugGA---CCG- -5'
25510 3' -60.7 NC_005337.1 + 133092 0.67 0.596218
Target:  5'- -cGUGcCGCGCUcGC-GCACCGCCUaGCg -3'
miRNA:   3'- ccCGC-GUGCGA-CGaCGUGGUGGAcCG- -5'
25510 3' -60.7 NC_005337.1 + 133068 0.68 0.527175
Target:  5'- -cGCGUACGCgGC-GCcggugGCCGCCUGGa -3'
miRNA:   3'- ccCGCGUGCGaCGaCG-----UGGUGGACCg -5'
25510 3' -60.7 NC_005337.1 + 132954 0.67 0.576271
Target:  5'- -uGCaGCGCGCUGgaccucCUGCGCCGCCggaUGGa -3'
miRNA:   3'- ccCG-CGUGCGAC------GACGUGGUGG---ACCg -5'
25510 3' -60.7 NC_005337.1 + 132823 0.67 0.626313
Target:  5'- uGGCGUACGUgGUcGCG-CACCUcGGCg -3'
miRNA:   3'- cCCGCGUGCGaCGaCGUgGUGGA-CCG- -5'
25510 3' -60.7 NC_005337.1 + 132763 0.67 0.626313
Target:  5'- uGGCGgACGC-GCUgGCGCgCGCCgaGGUg -3'
miRNA:   3'- cCCGCgUGCGaCGA-CGUG-GUGGa-CCG- -5'
25510 3' -60.7 NC_005337.1 + 132576 0.68 0.556476
Target:  5'- cGGCGCcuCGCccCUGCacuucGCCACCgGGCa -3'
miRNA:   3'- cCCGCGu-GCGacGACG-----UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 132468 0.69 0.470482
Target:  5'- cGGGaaCACGCcGCUGCACU-CCaUGGCc -3'
miRNA:   3'- -CCCgcGUGCGaCGACGUGGuGG-ACCG- -5'
25510 3' -60.7 NC_005337.1 + 132191 0.71 0.354988
Target:  5'- cGGcGCGCGCcgacaccgugcgccuGCUGCUGCGgCACggGGCc -3'
miRNA:   3'- -CC-CGCGUG---------------CGACGACGUgGUGgaCCG- -5'
25510 3' -60.7 NC_005337.1 + 132143 0.68 0.546652
Target:  5'- gGGGCGUcguugacagaACGCcGCUGCACgCguGCCUgaccgGGCu -3'
miRNA:   3'- -CCCGCG----------UGCGaCGACGUG-G--UGGA-----CCG- -5'
25510 3' -60.7 NC_005337.1 + 132076 0.7 0.452275
Target:  5'- cGGGC-CGCGCccGCgucCGCCGCCUGcGCc -3'
miRNA:   3'- -CCCGcGUGCGa-CGac-GUGGUGGAC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.