Results 1 - 20 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 81737 | 0.66 | 0.656445 |
Target: 5'- aGGCuCugGCUGU--CGCCGCC-GGCg -3' miRNA: 3'- cCCGcGugCGACGacGUGGUGGaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 854 | 0.66 | 0.636363 |
Target: 5'- aGGCgGCGgGCaGCgcggGCGCgGCCgGGCg -3' miRNA: 3'- cCCG-CGUgCGaCGa---CGUGgUGGaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 128693 | 0.66 | 0.656445 |
Target: 5'- cGGGCaCGCGC-GCUgGCgACgCGgCUGGCg -3' miRNA: 3'- -CCCGcGUGCGaCGA-CG-UG-GUgGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 24680 | 0.66 | 0.656445 |
Target: 5'- cGGUGgaaACGCUGCUcagGCGCuucaagCACCUGGg -3' miRNA: 3'- cCCGCg--UGCGACGA---CGUG------GUGGACCg -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 65322 | 0.66 | 0.656445 |
Target: 5'- -cGCGCAUGCcGCUGUcCCgcgucgucgGCCUGGa -3' miRNA: 3'- ccCGCGUGCGaCGACGuGG---------UGGACCg -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 39223 | 0.66 | 0.636363 |
Target: 5'- cGGGgGCACGCU-CUucGCAauCCGCgaGGUg -3' miRNA: 3'- -CCCgCGUGCGAcGA--CGU--GGUGgaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 54263 | 0.66 | 0.656445 |
Target: 5'- cGGGUGCgGCGCUua-GCGCCGCgC-GGCg -3' miRNA: 3'- -CCCGCG-UGCGAcgaCGUGGUG-GaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 126123 | 0.66 | 0.64641 |
Target: 5'- -cGCGCACGCcgUGC-GCGCgGCCaugcccGGCg -3' miRNA: 3'- ccCGCGUGCG--ACGaCGUGgUGGa-----CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 52813 | 0.66 | 0.636363 |
Target: 5'- cGGCGgAC-CUGCUGCGCgACUacGCg -3' miRNA: 3'- cCCGCgUGcGACGACGUGgUGGacCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 770 | 0.66 | 0.64641 |
Target: 5'- cGGCGgcCAugUGCUGC-GCGCCGCCgacgacgaGGCa -3' miRNA: 3'- cCCGC--GU--GCGACGaCGUGGUGGa-------CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 16030 | 0.66 | 0.636363 |
Target: 5'- aGGUaCACGC-GCUGCGgCGCCUGccGCc -3' miRNA: 3'- cCCGcGUGCGaCGACGUgGUGGAC--CG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 42133 | 0.66 | 0.656445 |
Target: 5'- cGGCGCugGCccGCgGCGCguCCggGGUc -3' miRNA: 3'- cCCGCGugCGa-CGaCGUGguGGa-CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 109170 | 0.66 | 0.656445 |
Target: 5'- --cCGCGCGC-GCcGCGCCGCgCgGGCg -3' miRNA: 3'- cccGCGUGCGaCGaCGUGGUG-GaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 35087 | 0.66 | 0.64641 |
Target: 5'- gGGGCcCugGC-GCUGCAugucggucuuCUugCUGGUg -3' miRNA: 3'- -CCCGcGugCGaCGACGU----------GGugGACCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 29720 | 0.66 | 0.64641 |
Target: 5'- aGGcGCGCACGCgcgcgcggUGUUGCggcggACCAgCgGGCc -3' miRNA: 3'- -CC-CGCGUGCG--------ACGACG-----UGGUgGaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 10403 | 0.66 | 0.656445 |
Target: 5'- cGGGCuGUGgaggUGCgGCUGCGCCcaggaggacGCCUGcGCg -3' miRNA: 3'- -CCCG-CGU----GCGaCGACGUGG---------UGGAC-CG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 75009 | 0.66 | 0.666462 |
Target: 5'- aGGCgGC-CGCcGCUGaCGCgCACCguggGGCu -3' miRNA: 3'- cCCG-CGuGCGaCGAC-GUG-GUGGa---CCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 121935 | 0.66 | 0.656445 |
Target: 5'- cGGaCGgACgGC-GCUGCACCACCacGCg -3' miRNA: 3'- cCC-GCgUG-CGaCGACGUGGUGGacCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 127046 | 0.66 | 0.686407 |
Target: 5'- cGGGCGCGgaGgUGC-GCACCGaa-GGCg -3' miRNA: 3'- -CCCGCGUg-CgACGaCGUGGUggaCCG- -5' |
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25510 | 3' | -60.7 | NC_005337.1 | + | 117906 | 0.66 | 0.64641 |
Target: 5'- uGGGCG-GCGCUGgUGCucgagGgCGCCgaaGGCg -3' miRNA: 3'- -CCCGCgUGCGACgACG-----UgGUGGa--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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