Results 21 - 40 of 325 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 87599 | 0.66 | 0.685413 |
Target: 5'- cGGCGCcgcucggGCGaCUGCUGCGCgAUCgcgcGCa -3' miRNA: 3'- cCCGCG-------UGC-GACGACGUGgUGGac--CG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 24680 | 0.66 | 0.656445 |
Target: 5'- cGGUGgaaACGCUGCUcagGCGCuucaagCACCUGGg -3' miRNA: 3'- cCCGCg--UGCGACGA---CGUG------GUGGACCg -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 10403 | 0.66 | 0.656445 |
Target: 5'- cGGGCuGUGgaggUGCgGCUGCGCCcaggaggacGCCUGcGCg -3' miRNA: 3'- -CCCG-CGU----GCGaCGACGUGG---------UGGAC-CG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 39223 | 0.66 | 0.636363 |
Target: 5'- cGGGgGCACGCU-CUucGCAauCCGCgaGGUg -3' miRNA: 3'- -CCCgCGUGCGAcGA--CGU--GGUGgaCCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 121935 | 0.66 | 0.656445 |
Target: 5'- cGGaCGgACgGC-GCUGCACCACCacGCg -3' miRNA: 3'- cCC-GCgUG-CGaCGACGUGGUGGacCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 52813 | 0.66 | 0.636363 |
Target: 5'- cGGCGgAC-CUGCUGCGCgACUacGCg -3' miRNA: 3'- cCCGCgUGcGACGACGUGgUGGacCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 75009 | 0.66 | 0.666462 |
Target: 5'- aGGCgGC-CGCcGCUGaCGCgCACCguggGGCu -3' miRNA: 3'- cCCG-CGuGCGaCGAC-GUG-GUGGa---CCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 58038 | 0.66 | 0.636363 |
Target: 5'- cGGcCGUGCGCUccucaacgccgcGCUGCACaaccgcaccgaCACCgUGGCg -3' miRNA: 3'- cCC-GCGUGCGA------------CGACGUG-----------GUGG-ACCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 8649 | 0.66 | 0.676452 |
Target: 5'- -cGUGC-CGgaGCUuCAgCGCCUGGCa -3' miRNA: 3'- ccCGCGuGCgaCGAcGUgGUGGACCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 854 | 0.66 | 0.636363 |
Target: 5'- aGGCgGCGgGCaGCgcggGCGCgGCCgGGCg -3' miRNA: 3'- cCCG-CGUgCGaCGa---CGUGgUGGaCCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 128693 | 0.66 | 0.656445 |
Target: 5'- cGGGCaCGCGC-GCUgGCgACgCGgCUGGCg -3' miRNA: 3'- -CCCGcGUGCGaCGA-CG-UG-GUgGACCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 35087 | 0.66 | 0.64641 |
Target: 5'- gGGGCcCugGC-GCUGCAugucggucuuCUugCUGGUg -3' miRNA: 3'- -CCCGcGugCGaCGACGU----------GGugGACCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 854 | 0.66 | 0.636363 |
Target: 5'- aGGCgGCGgGCaGCgcggGCGCgGCCgGGCg -3' miRNA: 3'- cCCG-CGUgCGaCGa---CGUGgUGGaCCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 1156 | 0.66 | 0.686407 |
Target: 5'- gGGGaGCGCGCcgGCggagcgGC-CCGCUaGGCg -3' miRNA: 3'- -CCCgCGUGCGa-CGa-----CGuGGUGGaCCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 65322 | 0.66 | 0.656445 |
Target: 5'- -cGCGCAUGCcGCUGUcCCgcgucgucgGCCUGGa -3' miRNA: 3'- ccCGCGUGCGaCGACGuGG---------UGGACCg -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 84873 | 0.66 | 0.666462 |
Target: 5'- gGGGCGCAUGUaGCU-UACUcgGCCgcggggGGCg -3' miRNA: 3'- -CCCGCGUGCGaCGAcGUGG--UGGa-----CCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 126123 | 0.66 | 0.64641 |
Target: 5'- -cGCGCACGCcgUGC-GCGCgGCCaugcccGGCg -3' miRNA: 3'- ccCGCGUGCG--ACGaCGUGgUGGa-----CCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 133423 | 0.66 | 0.686407 |
Target: 5'- -cGCGCccGCGCUGCc-CGCCGCCUucgucgagcccgGGCc -3' miRNA: 3'- ccCGCG--UGCGACGacGUGGUGGA------------CCG- -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 97080 | 0.66 | 0.636363 |
Target: 5'- aGGCGCGcCGCgGgUGCAUaaACCUGGa -3' miRNA: 3'- cCCGCGU-GCGaCgACGUGg-UGGACCg -5' |
|||||||
25510 | 3' | -60.7 | NC_005337.1 | + | 121498 | 0.66 | 0.686407 |
Target: 5'- cGGGUuCACGCcGCUGCACauguaCAUCUGcuacGCg -3' miRNA: 3'- -CCCGcGUGCGaCGACGUG-----GUGGAC----CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home