miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 5992 0.73 0.268377
Target:  5'- aGGCGCGCGC-GUUGCagACCGCCgcgugcagcGGCg -3'
miRNA:   3'- cCCGCGUGCGaCGACG--UGGUGGa--------CCG- -5'
25510 3' -60.7 NC_005337.1 + 6230 0.67 0.606234
Target:  5'- aGGGCGUugG--GCacgUGCACgGCCUuGGCc -3'
miRNA:   3'- -CCCGCGugCgaCG---ACGUGgUGGA-CCG- -5'
25510 3' -60.7 NC_005337.1 + 7851 0.66 0.636363
Target:  5'- -cGCGCACGCgcGCcGuCGCgCGCCgGGCg -3'
miRNA:   3'- ccCGCGUGCGa-CGaC-GUG-GUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 8649 0.66 0.676452
Target:  5'- -cGUGC-CGgaGCUuCAgCGCCUGGCa -3'
miRNA:   3'- ccCGCGuGCgaCGAcGUgGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 8988 0.69 0.470482
Target:  5'- cGGGCGC-CGCauagGCaUGCAUCcuguCCUGGg -3'
miRNA:   3'- -CCCGCGuGCGa---CG-ACGUGGu---GGACCg -5'
25510 3' -60.7 NC_005337.1 + 9659 0.66 0.666462
Target:  5'- aGGCGCGCaaUGCcuccaGCGCCACgCguucGGCa -3'
miRNA:   3'- cCCGCGUGcgACGa----CGUGGUG-Ga---CCG- -5'
25510 3' -60.7 NC_005337.1 + 9752 0.66 0.686407
Target:  5'- -aGCGCGCGUcgGCcgGCGCCgGgUUGGCa -3'
miRNA:   3'- ccCGCGUGCGa-CGa-CGUGG-UgGACCG- -5'
25510 3' -60.7 NC_005337.1 + 10403 0.66 0.656445
Target:  5'- cGGGCuGUGgaggUGCgGCUGCGCCcaggaggacGCCUGcGCg -3'
miRNA:   3'- -CCCG-CGU----GCGaCGACGUGG---------UGGAC-CG- -5'
25510 3' -60.7 NC_005337.1 + 11046 0.69 0.49281
Target:  5'- cGGCGgGCaGCUGuCUGCagAggacgaagcccuggcCCGCCUGGCa -3'
miRNA:   3'- cCCGCgUG-CGAC-GACG--U---------------GGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 11207 0.68 0.536883
Target:  5'- cGGUGCACGCgGCUcaugccGUACCGCa-GGUg -3'
miRNA:   3'- cCCGCGUGCGaCGA------CGUGGUGgaCCG- -5'
25510 3' -60.7 NC_005337.1 + 11315 0.72 0.342024
Target:  5'- cGGGCGUugGC-GCagagguccgucccaUGCGCCACCaccgGGUu -3'
miRNA:   3'- -CCCGCGugCGaCG--------------ACGUGGUGGa---CCG- -5'
25510 3' -60.7 NC_005337.1 + 11556 0.67 0.606234
Target:  5'- cGGGCacgugcgacaGCACGCgGac-CACCACCUcgGGCg -3'
miRNA:   3'- -CCCG----------CGUGCGaCgacGUGGUGGA--CCG- -5'
25510 3' -60.7 NC_005337.1 + 11656 0.67 0.615263
Target:  5'- cGGGCGCguccgagaagaacACGCcGCcGC-CCGCgUGGUc -3'
miRNA:   3'- -CCCGCG-------------UGCGaCGaCGuGGUGgACCG- -5'
25510 3' -60.7 NC_005337.1 + 11863 0.66 0.676452
Target:  5'- cGGCGCggacagGCGCcGC-GCGCCGCC-GcGCa -3'
miRNA:   3'- cCCGCG------UGCGaCGaCGUGGUGGaC-CG- -5'
25510 3' -60.7 NC_005337.1 + 11904 0.67 0.615263
Target:  5'- -cGCGCACGCacaUGCgcguggcguccgaUGCGgCACCcgGGCg -3'
miRNA:   3'- ccCGCGUGCG---ACG-------------ACGUgGUGGa-CCG- -5'
25510 3' -60.7 NC_005337.1 + 13704 0.67 0.605231
Target:  5'- aGGUGCGCGgUGgaGCAgaucacguccaggUCGCCgUGGCu -3'
miRNA:   3'- cCCGCGUGCgACgaCGU-------------GGUGG-ACCG- -5'
25510 3' -60.7 NC_005337.1 + 15480 0.81 0.092018
Target:  5'- cGGCGCGCGCgGCacgacgGCGCCGCCgccGGCg -3'
miRNA:   3'- cCCGCGUGCGaCGa-----CGUGGUGGa--CCG- -5'
25510 3' -60.7 NC_005337.1 + 16030 0.66 0.636363
Target:  5'- aGGUaCACGC-GCUGCGgCGCCUGccGCc -3'
miRNA:   3'- cCCGcGUGCGaCGACGUgGUGGAC--CG- -5'
25510 3' -60.7 NC_005337.1 + 16761 0.66 0.686407
Target:  5'- cGGCGCGCcgGCUGaugucgUGCACCGCgUcGCc -3'
miRNA:   3'- cCCGCGUG--CGACg-----ACGUGGUGgAcCG- -5'
25510 3' -60.7 NC_005337.1 + 17418 0.71 0.391769
Target:  5'- cGGGCGCGCGUUcGuCUGCACCAUg---- -3'
miRNA:   3'- -CCCGCGUGCGA-C-GACGUGGUGgaccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.