miRNA display CGI


Results 1 - 20 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 127407 1.14 0.000409
Target:  5'- cGGGCGCACGCUGCUGCACCACCUGGCg -3'
miRNA:   3'- -CCCGCGUGCGACGACGUGGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 28742 0.73 0.301086
Target:  5'- cGGGUGgaCGCGCUGCUGaaGCC-CCUGGa -3'
miRNA:   3'- -CCCGC--GUGCGACGACg-UGGuGGACCg -5'
25510 3' -60.7 NC_005337.1 + 24459 0.72 0.336787
Target:  5'- cGGGCaGUACGUcacGCUGCACgaccucgacuacUACCUGGUg -3'
miRNA:   3'- -CCCG-CGUGCGa--CGACGUG------------GUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 127046 0.66 0.686407
Target:  5'- cGGGCGCGgaGgUGC-GCACCGaa-GGCg -3'
miRNA:   3'- -CCCGCGUg-CgACGaCGUGGUggaCCG- -5'
25510 3' -60.7 NC_005337.1 + 100405 0.78 0.142375
Target:  5'- cGGGCGCGCGCUacgagaucgacGC-GCGCCACgUGGa -3'
miRNA:   3'- -CCCGCGUGCGA-----------CGaCGUGGUGgACCg -5'
25510 3' -60.7 NC_005337.1 + 110952 0.76 0.182773
Target:  5'- uGGGCGUGCGCaGCUGCGCgGCC--GCg -3'
miRNA:   3'- -CCCGCGUGCGaCGACGUGgUGGacCG- -5'
25510 3' -60.7 NC_005337.1 + 57287 0.75 0.206563
Target:  5'- cGGCGCGCGCgGCUGCGgCGCCgcucucGGa -3'
miRNA:   3'- cCCGCGUGCGaCGACGUgGUGGa-----CCg -5'
25510 3' -60.7 NC_005337.1 + 73320 0.74 0.250164
Target:  5'- uGGGCGCGCGCcccaugcgcaUGCcgGCGCgGCagUGGCg -3'
miRNA:   3'- -CCCGCGUGCG----------ACGa-CGUGgUGg-ACCG- -5'
25510 3' -60.7 NC_005337.1 + 5992 0.73 0.268377
Target:  5'- aGGCGCGCGC-GUUGCagACCGCCgcgugcagcGGCg -3'
miRNA:   3'- cCCGCGUGCGaCGACG--UGGUGGa--------CCG- -5'
25510 3' -60.7 NC_005337.1 + 133150 0.73 0.294306
Target:  5'- uGGuCGCGCGCgUGCUGCGgCugCUcccGGCg -3'
miRNA:   3'- cCC-GCGUGCG-ACGACGUgGugGA---CCG- -5'
25510 3' -60.7 NC_005337.1 + 66908 0.73 0.283706
Target:  5'- cGGCGCACGaUguacucggucauggGCUGCGCCAUCguggagGGCg -3'
miRNA:   3'- cCCGCGUGC-Ga-------------CGACGUGGUGGa-----CCG- -5'
25510 3' -60.7 NC_005337.1 + 123831 0.74 0.26219
Target:  5'- uGGCGCACGacgcGC-GCACCGCCgcgcaGGCg -3'
miRNA:   3'- cCCGCGUGCga--CGaCGUGGUGGa----CCG- -5'
25510 3' -60.7 NC_005337.1 + 39495 0.81 0.089652
Target:  5'- -cGCGCGCGCUGCUGCuggugaaccCCACCgcgGGCc -3'
miRNA:   3'- ccCGCGUGCGACGACGu--------GGUGGa--CCG- -5'
25510 3' -60.7 NC_005337.1 + 108287 0.73 0.287645
Target:  5'- aGGGCaucaucccCAUGCUGCUGCGCUccuuCCUGGa -3'
miRNA:   3'- -CCCGc-------GUGCGACGACGUGGu---GGACCg -5'
25510 3' -60.7 NC_005337.1 + 3386 0.79 0.119139
Target:  5'- uGGGCGagaaGCGC-GCgUGCGCCAUCUGGUa -3'
miRNA:   3'- -CCCGCg---UGCGaCG-ACGUGGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 131897 0.74 0.256119
Target:  5'- cGGGCGCgcacguggACGCggucgaccggUGCUGCGgCGCgCUGGCc -3'
miRNA:   3'- -CCCGCG--------UGCG----------ACGACGUgGUG-GACCG- -5'
25510 3' -60.7 NC_005337.1 + 59024 0.73 0.291627
Target:  5'- uGGGUGCGCGCgGCcuucaccgacuucGCGCCG-CUGGCg -3'
miRNA:   3'- -CCCGCGUGCGaCGa------------CGUGGUgGACCG- -5'
25510 3' -60.7 NC_005337.1 + 67646 0.72 0.322146
Target:  5'- uGGuCGCGCGCgUGCUccaGCACCACCgagugcUGGUu -3'
miRNA:   3'- cCC-GCGUGCG-ACGA---CGUGGUGG------ACCG- -5'
25510 3' -60.7 NC_005337.1 + 128796 0.78 0.138818
Target:  5'- cGGGCGUGCGCaccgagcggUGCcGCACCACCgugUGGUa -3'
miRNA:   3'- -CCCGCGUGCG---------ACGaCGUGGUGG---ACCG- -5'
25510 3' -60.7 NC_005337.1 + 116657 0.75 0.205562
Target:  5'- cGGGCGCugGaguccuacauggUGCUGCAgCCGCCcgcgGGCg -3'
miRNA:   3'- -CCCGCGugCg-----------ACGACGU-GGUGGa---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.