miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 115206 0.71 0.351906
Target:  5'- cGGUGC-CGCUGCggGCGCUGCUgaagaugGGCg -3'
miRNA:   3'- cCCGCGuGCGACGa-CGUGGUGGa------CCG- -5'
25510 3' -60.7 NC_005337.1 + 24459 0.72 0.336787
Target:  5'- cGGGCaGUACGUcacGCUGCACgaccucgacuacUACCUGGUg -3'
miRNA:   3'- -CCCG-CGUGCGa--CGACGUG------------GUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 123831 0.74 0.26219
Target:  5'- uGGCGCACGacgcGC-GCACCGCCgcgcaGGCg -3'
miRNA:   3'- cCCGCGUGCga--CGaCGUGGUGGa----CCG- -5'
25510 3' -60.7 NC_005337.1 + 128796 0.78 0.138818
Target:  5'- cGGGCGUGCGCaccgagcggUGCcGCACCACCgugUGGUa -3'
miRNA:   3'- -CCCGCGUGCG---------ACGaCGUGGUGG---ACCG- -5'
25510 3' -60.7 NC_005337.1 + 119872 0.7 0.41192
Target:  5'- cGGCGCgguucaGCGCcggcgGaCUGCuggacgucaucaaggACCACCUGGCg -3'
miRNA:   3'- cCCGCG------UGCGa----C-GACG---------------UGGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 95305 0.71 0.386833
Target:  5'- aGGCGCgcggcGCGCUGUUGCGCuCgucgucgguuagcgcGCCgUGGCg -3'
miRNA:   3'- cCCGCG-----UGCGACGACGUG-G---------------UGG-ACCG- -5'
25510 3' -60.7 NC_005337.1 + 28742 0.73 0.301086
Target:  5'- cGGGUGgaCGCGCUGCUGaaGCC-CCUGGa -3'
miRNA:   3'- -CCCGC--GUGCGACGACg-UGGuGGACCg -5'
25510 3' -60.7 NC_005337.1 + 3386 0.79 0.119139
Target:  5'- uGGGCGagaaGCGC-GCgUGCGCCAUCUGGUa -3'
miRNA:   3'- -CCCGCg---UGCGaCG-ACGUGGUGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 526 0.71 0.375475
Target:  5'- cGGCGCagGCGCUccaGCUGCcggcgccacuccGCCACC-GGCc -3'
miRNA:   3'- cCCGCG--UGCGA---CGACG------------UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 39495 0.81 0.089652
Target:  5'- -cGCGCGCGCUGCUGCuggugaaccCCACCgcgGGCc -3'
miRNA:   3'- ccCGCGUGCGACGACGu--------GGUGGa--CCG- -5'
25510 3' -60.7 NC_005337.1 + 67646 0.72 0.322146
Target:  5'- uGGuCGCGCGCgUGCUccaGCACCACCgagugcUGGUu -3'
miRNA:   3'- cCC-GCGUGCG-ACGA---CGUGGUGG------ACCG- -5'
25510 3' -60.7 NC_005337.1 + 54110 0.71 0.351906
Target:  5'- cGGGCGCugcuacguggaGCGCgacgGCcGCGCCGCgcgcaUGGCu -3'
miRNA:   3'- -CCCGCG-----------UGCGa---CGaCGUGGUGg----ACCG- -5'
25510 3' -60.7 NC_005337.1 + 108287 0.73 0.287645
Target:  5'- aGGGCaucaucccCAUGCUGCUGCGCUccuuCCUGGa -3'
miRNA:   3'- -CCCGc-------GUGCGACGACGUGGu---GGACCg -5'
25510 3' -60.7 NC_005337.1 + 5992 0.73 0.268377
Target:  5'- aGGCGCGCGC-GUUGCagACCGCCgcgugcagcGGCg -3'
miRNA:   3'- cCCGCGUGCGaCGACG--UGGUGGa--------CCG- -5'
25510 3' -60.7 NC_005337.1 + 57287 0.75 0.206563
Target:  5'- cGGCGCGCGCgGCUGCGgCGCCgcucucGGa -3'
miRNA:   3'- cCCGCGUGCGaCGACGUgGUGGa-----CCg -5'
25510 3' -60.7 NC_005337.1 + 100405 0.78 0.142375
Target:  5'- cGGGCGCGCGCUacgagaucgacGC-GCGCCACgUGGa -3'
miRNA:   3'- -CCCGCGUGCGA-----------CGaCGUGGUGgACCg -5'
25510 3' -60.7 NC_005337.1 + 38680 0.7 0.443317
Target:  5'- ---gGCGCGCUGCUGCACCcgGCCgaccccGGa -3'
miRNA:   3'- cccgCGUGCGACGACGUGG--UGGa-----CCg -5'
25510 3' -60.7 NC_005337.1 + 66288 0.7 0.417057
Target:  5'- uGGCGCACGCgccgaccCUGgACCGCgUGaGCg -3'
miRNA:   3'- cCCGCGUGCGac-----GACgUGGUGgAC-CG- -5'
25510 3' -60.7 NC_005337.1 + 23939 0.7 0.408517
Target:  5'- aGGCGCGCGCgac-GCGCCcgGCCgGGCc -3'
miRNA:   3'- cCCGCGUGCGacgaCGUGG--UGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 116327 0.71 0.391769
Target:  5'- cGGUGCGUGCUGCUGCGggcgcagCGCCgGGCc -3'
miRNA:   3'- cCCGCGUGCGACGACGUg------GUGGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.