miRNA display CGI


Results 21 - 40 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 570 0.66 0.676452
Target:  5'- -cGCGUACGCcGCgGCcgcgcggaaGCCGCC-GGCg -3'
miRNA:   3'- ccCGCGUGCGaCGaCG---------UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 54141 0.66 0.673458
Target:  5'- cGGGaGC-CGCgUGUcGCGCCcgguguccacgaccGCCUGGCu -3'
miRNA:   3'- -CCCgCGuGCG-ACGaCGUGG--------------UGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 102851 0.66 0.670462
Target:  5'- cGGGcCGCGCGCcaggaagugcaUGUucgucauggacaugaUGCGCCGCgagGGCg -3'
miRNA:   3'- -CCC-GCGUGCG-----------ACG---------------ACGUGGUGga-CCG- -5'
25510 3' -60.7 NC_005337.1 + 107007 0.66 0.668462
Target:  5'- cGGGCGCagagacgcgguucACGCucacgaacucggagaUGCUGU-CCgacgaggACCUGGCg -3'
miRNA:   3'- -CCCGCG-------------UGCG---------------ACGACGuGG-------UGGACCG- -5'
25510 3' -60.7 NC_005337.1 + 75009 0.66 0.666462
Target:  5'- aGGCgGC-CGCcGCUGaCGCgCACCguggGGCu -3'
miRNA:   3'- cCCG-CGuGCGaCGAC-GUG-GUGGa---CCG- -5'
25510 3' -60.7 NC_005337.1 + 62622 0.66 0.666462
Target:  5'- --cCGCGCGUUGaagUGCGCgGCCaGGCg -3'
miRNA:   3'- cccGCGUGCGACg--ACGUGgUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 84873 0.66 0.666462
Target:  5'- gGGGCGCAUGUaGCU-UACUcgGCCgcggggGGCg -3'
miRNA:   3'- -CCCGCGUGCGaCGAcGUGG--UGGa-----CCG- -5'
25510 3' -60.7 NC_005337.1 + 65706 0.66 0.666462
Target:  5'- cGGUGCugGCcgaGCUccGCGCCA--UGGCg -3'
miRNA:   3'- cCCGCGugCGa--CGA--CGUGGUggACCG- -5'
25510 3' -60.7 NC_005337.1 + 99295 0.66 0.666462
Target:  5'- uGGCGCgGCGCgGCguuccGCAgCGCCgGGUc -3'
miRNA:   3'- cCCGCG-UGCGaCGa----CGUgGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 9659 0.66 0.666462
Target:  5'- aGGCGCGCaaUGCcuccaGCGCCACgCguucGGCa -3'
miRNA:   3'- cCCGCGUGcgACGa----CGUGGUG-Ga---CCG- -5'
25510 3' -60.7 NC_005337.1 + 34822 0.66 0.666462
Target:  5'- -cGCGCACGC-GC-GCGuCCACgaGGUg -3'
miRNA:   3'- ccCGCGUGCGaCGaCGU-GGUGgaCCG- -5'
25510 3' -60.7 NC_005337.1 + 75118 0.66 0.666462
Target:  5'- uGGGgGaggaACGUcgugggGCUGUACCGCacgGGCa -3'
miRNA:   3'- -CCCgCg---UGCGa-----CGACGUGGUGga-CCG- -5'
25510 3' -60.7 NC_005337.1 + 115905 0.66 0.666462
Target:  5'- cGGGCGCuucuCGCUGggGUacgagucgGCCACg-GGCc -3'
miRNA:   3'- -CCCGCGu---GCGACgaCG--------UGGUGgaCCG- -5'
25510 3' -60.7 NC_005337.1 + 53919 0.66 0.666462
Target:  5'- cGGCGCgaACGCgUGCUGguUCagguaucgcGCCUGGa -3'
miRNA:   3'- cCCGCG--UGCG-ACGACguGG---------UGGACCg -5'
25510 3' -60.7 NC_005337.1 + 70325 0.66 0.663459
Target:  5'- cGGUGCACGCgcacgaagacgGCguuccgcacggcggUGCGCCGCCgcacgUGGUc -3'
miRNA:   3'- cCCGCGUGCGa----------CG--------------ACGUGGUGG-----ACCG- -5'
25510 3' -60.7 NC_005337.1 + 95602 0.66 0.660455
Target:  5'- cGGCGaacaGCGuCUGCUGCACgucggguuugagcgaUGCCaggGGCa -3'
miRNA:   3'- cCCGCg---UGC-GACGACGUG---------------GUGGa--CCG- -5'
25510 3' -60.7 NC_005337.1 + 68973 0.66 0.656445
Target:  5'- -cGCGCGCGCaGCuUGCccuCCucCUUGGCg -3'
miRNA:   3'- ccCGCGUGCGaCG-ACGu--GGu-GGACCG- -5'
25510 3' -60.7 NC_005337.1 + 54263 0.66 0.656445
Target:  5'- cGGGUGCgGCGCUua-GCGCCGCgC-GGCg -3'
miRNA:   3'- -CCCGCG-UGCGAcgaCGUGGUG-GaCCG- -5'
25510 3' -60.7 NC_005337.1 + 50312 0.66 0.656445
Target:  5'- -cGCGC-CGCcGCUGCccugcgcggACCGCCcGGUa -3'
miRNA:   3'- ccCGCGuGCGaCGACG---------UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 128693 0.66 0.656445
Target:  5'- cGGGCaCGCGC-GCUgGCgACgCGgCUGGCg -3'
miRNA:   3'- -CCCGcGUGCGaCGA-CG-UG-GUgGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.