miRNA display CGI


Results 41 - 60 of 325 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25510 3' -60.7 NC_005337.1 + 68973 0.66 0.656445
Target:  5'- -cGCGCGCGCaGCuUGCccuCCucCUUGGCg -3'
miRNA:   3'- ccCGCGUGCGaCG-ACGu--GGu-GGACCG- -5'
25510 3' -60.7 NC_005337.1 + 54263 0.66 0.656445
Target:  5'- cGGGUGCgGCGCUua-GCGCCGCgC-GGCg -3'
miRNA:   3'- -CCCGCG-UGCGAcgaCGUGGUG-GaCCG- -5'
25510 3' -60.7 NC_005337.1 + 65322 0.66 0.656445
Target:  5'- -cGCGCAUGCcGCUGUcCCgcgucgucgGCCUGGa -3'
miRNA:   3'- ccCGCGUGCGaCGACGuGG---------UGGACCg -5'
25510 3' -60.7 NC_005337.1 + 42133 0.66 0.656445
Target:  5'- cGGCGCugGCccGCgGCGCguCCggGGUc -3'
miRNA:   3'- cCCGCGugCGa-CGaCGUGguGGa-CCG- -5'
25510 3' -60.7 NC_005337.1 + 24680 0.66 0.656445
Target:  5'- cGGUGgaaACGCUGCUcagGCGCuucaagCACCUGGg -3'
miRNA:   3'- cCCGCg--UGCGACGA---CGUG------GUGGACCg -5'
25510 3' -60.7 NC_005337.1 + 121935 0.66 0.656445
Target:  5'- cGGaCGgACgGC-GCUGCACCACCacGCg -3'
miRNA:   3'- cCC-GCgUG-CGaCGACGUGGUGGacCG- -5'
25510 3' -60.7 NC_005337.1 + 81737 0.66 0.656445
Target:  5'- aGGCuCugGCUGU--CGCCGCC-GGCg -3'
miRNA:   3'- cCCGcGugCGACGacGUGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 109170 0.66 0.656445
Target:  5'- --cCGCGCGC-GCcGCGCCGCgCgGGCg -3'
miRNA:   3'- cccGCGUGCGaCGaCGUGGUG-GaCCG- -5'
25510 3' -60.7 NC_005337.1 + 65454 0.66 0.655442
Target:  5'- aGGGCGCgacgGCGUUGUacucguccaccagUGUcuccACCACC-GGCu -3'
miRNA:   3'- -CCCGCG----UGCGACG-------------ACG----UGGUGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 35268 0.66 0.64641
Target:  5'- aGGcCGCGCGCaccucgggggGCgGCuCCACCUcGGCc -3'
miRNA:   3'- cCC-GCGUGCGa---------CGaCGuGGUGGA-CCG- -5'
25510 3' -60.7 NC_005337.1 + 50901 0.66 0.64641
Target:  5'- cGGGCGCGCGCgcccagcgGCcGguCCGCagccagucGGCc -3'
miRNA:   3'- -CCCGCGUGCGa-------CGaCguGGUGga------CCG- -5'
25510 3' -60.7 NC_005337.1 + 770 0.66 0.64641
Target:  5'- cGGCGgcCAugUGCUGC-GCGCCGCCgacgacgaGGCa -3'
miRNA:   3'- cCCGC--GU--GCGACGaCGUGGUGGa-------CCG- -5'
25510 3' -60.7 NC_005337.1 + 110511 0.66 0.64641
Target:  5'- uGGCGCucGCGCgugGUgaacacgGCGCCcACCaGGCu -3'
miRNA:   3'- cCCGCG--UGCGa--CGa------CGUGG-UGGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 99588 0.66 0.64641
Target:  5'- -aGUGCACGCUGaCcGUGCUggGCCUGGa -3'
miRNA:   3'- ccCGCGUGCGAC-GaCGUGG--UGGACCg -5'
25510 3' -60.7 NC_005337.1 + 35087 0.66 0.64641
Target:  5'- gGGGCcCugGC-GCUGCAugucggucuuCUugCUGGUg -3'
miRNA:   3'- -CCCGcGugCGaCGACGU----------GGugGACCG- -5'
25510 3' -60.7 NC_005337.1 + 29720 0.66 0.64641
Target:  5'- aGGcGCGCACGCgcgcgcggUGUUGCggcggACCAgCgGGCc -3'
miRNA:   3'- -CC-CGCGUGCG--------ACGACG-----UGGUgGaCCG- -5'
25510 3' -60.7 NC_005337.1 + 770 0.66 0.64641
Target:  5'- cGGCGgcCAugUGCUGC-GCGCCGCCgacgacgaGGCa -3'
miRNA:   3'- cCCGC--GU--GCGACGaCGUGGUGGa-------CCG- -5'
25510 3' -60.7 NC_005337.1 + 126123 0.66 0.64641
Target:  5'- -cGCGCACGCcgUGC-GCGCgGCCaugcccGGCg -3'
miRNA:   3'- ccCGCGUGCG--ACGaCGUGgUGGa-----CCG- -5'
25510 3' -60.7 NC_005337.1 + 117906 0.66 0.64641
Target:  5'- uGGGCG-GCGCUGgUGCucgagGgCGCCgaaGGCg -3'
miRNA:   3'- -CCCGCgUGCGACgACG-----UgGUGGa--CCG- -5'
25510 3' -60.7 NC_005337.1 + 58038 0.66 0.636363
Target:  5'- cGGcCGUGCGCUccucaacgccgcGCUGCACaaccgcaccgaCACCgUGGCg -3'
miRNA:   3'- cCC-GCGUGCGA------------CGACGUG-----------GUGG-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.