miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25511 3' -55.3 NC_005337.1 + 36348 0.66 0.920066
Target:  5'- cGUCCGCGcGUCcGAgUGCGacucGCGACAc -3'
miRNA:   3'- -CAGGCGCuCAGaCU-GCGCa---UGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 22640 0.66 0.920066
Target:  5'- aUCCGCGAGgccuucGGCGCGgacgcGCGGCu- -3'
miRNA:   3'- cAGGCGCUCaga---CUGCGCa----UGCUGua -5'
25511 3' -55.3 NC_005337.1 + 62724 0.66 0.920066
Target:  5'- uGUCCGCGAugaaGUC---CGUGUACGACu- -3'
miRNA:   3'- -CAGGCGCU----CAGacuGCGCAUGCUGua -5'
25511 3' -55.3 NC_005337.1 + 86392 0.66 0.920066
Target:  5'- uGUCCGCcAGgcggCUGcGCGCGUcCGGCGc -3'
miRNA:   3'- -CAGGCGcUCa---GAC-UGCGCAuGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 115580 0.66 0.914245
Target:  5'- -gCCGCGuGUCUGAgCGUGUACu---- -3'
miRNA:   3'- caGGCGCuCAGACU-GCGCAUGcugua -5'
25511 3' -55.3 NC_005337.1 + 110361 0.66 0.90818
Target:  5'- -gCCGCGGGcgCgcgGGCGCGcggcaGCGACAg -3'
miRNA:   3'- caGGCGCUCa-Ga--CUGCGCa----UGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 115519 0.66 0.901873
Target:  5'- -cCCuCGAGUCcauCGUGUACGGCAUg -3'
miRNA:   3'- caGGcGCUCAGacuGCGCAUGCUGUA- -5'
25511 3' -55.3 NC_005337.1 + 120557 0.66 0.901873
Target:  5'- aGUCCucGCgGAGcUCgGugGUGUGCGGCAa -3'
miRNA:   3'- -CAGG--CG-CUC-AGaCugCGCAUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 84894 0.66 0.901873
Target:  5'- -gCCGCGGGg--GGCG-GUGCGGCGg -3'
miRNA:   3'- caGGCGCUCagaCUGCgCAUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 107049 0.66 0.888543
Target:  5'- uGUCCGaCGAGgacCUGGCGgCG-GCGGCGc -3'
miRNA:   3'- -CAGGC-GCUCa--GACUGC-GCaUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 46133 0.66 0.888543
Target:  5'- gGUCCGCGAGcUCcGACGCcaUGgGGCGg -3'
miRNA:   3'- -CAGGCGCUC-AGaCUGCGc-AUgCUGUa -5'
25511 3' -55.3 NC_005337.1 + 7463 0.66 0.888543
Target:  5'- cGUCCGUGGcGaCgagGGCGCGcACGACGUc -3'
miRNA:   3'- -CAGGCGCU-CaGa--CUGCGCaUGCUGUA- -5'
25511 3' -55.3 NC_005337.1 + 25309 0.66 0.888543
Target:  5'- -gCCGCGcGUCgaccGGCGCGUguACGACc- -3'
miRNA:   3'- caGGCGCuCAGa---CUGCGCA--UGCUGua -5'
25511 3' -55.3 NC_005337.1 + 109758 0.67 0.866817
Target:  5'- cGUCCGCGAgGUCgucCGCGgugggACGACc- -3'
miRNA:   3'- -CAGGCGCU-CAGacuGCGCa----UGCUGua -5'
25511 3' -55.3 NC_005337.1 + 35113 0.67 0.85124
Target:  5'- cGUCCGCGcGgcgCgGACGCccaGUGCGGCGc -3'
miRNA:   3'- -CAGGCGCuCa--GaCUGCG---CAUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 68395 0.67 0.843141
Target:  5'- cGUCCGCc---CUGcGCGCGUGCGugGUa -3'
miRNA:   3'- -CAGGCGcucaGAC-UGCGCAUGCugUA- -5'
25511 3' -55.3 NC_005337.1 + 42226 0.68 0.834845
Target:  5'- cGUCCGCGAGUU---CGCGcACGGCc- -3'
miRNA:   3'- -CAGGCGCUCAGacuGCGCaUGCUGua -5'
25511 3' -55.3 NC_005337.1 + 76533 0.68 0.827217
Target:  5'- -aCCGCGGGUCgucguaguugaugaaGGCGCaGUugGGCAc -3'
miRNA:   3'- caGGCGCUCAGa--------------CUGCG-CAugCUGUa -5'
25511 3' -55.3 NC_005337.1 + 8069 0.68 0.808852
Target:  5'- cUCCGCGAccgCgagGACGCGcgACGGCAc -3'
miRNA:   3'- cAGGCGCUca-Ga--CUGCGCa-UGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 109390 0.68 0.807064
Target:  5'- --gCGCGGGUCUGGCGUGccguccacagacACGGCGUg -3'
miRNA:   3'- cagGCGCUCAGACUGCGCa-----------UGCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.