miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25511 3' -55.3 NC_005337.1 + 52573 0.69 0.790685
Target:  5'- cUCCGCGGGgacGGCGCG-GCGGCGc -3'
miRNA:   3'- cAGGCGCUCagaCUGCGCaUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 112852 0.69 0.790685
Target:  5'- cUCCGCGAG-CUGGcCGCGgcccacguCGACGa -3'
miRNA:   3'- cAGGCGCUCaGACU-GCGCau------GCUGUa -5'
25511 3' -55.3 NC_005337.1 + 104300 0.69 0.771931
Target:  5'- gGUCCGCGAG---GGCGCG-GCGGCGc -3'
miRNA:   3'- -CAGGCGCUCagaCUGCGCaUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 12358 0.69 0.742862
Target:  5'- cGUCCGCGGacGUCgcGGCGCGUcGCGAUu- -3'
miRNA:   3'- -CAGGCGCU--CAGa-CUGCGCA-UGCUGua -5'
25511 3' -55.3 NC_005337.1 + 42654 0.7 0.722968
Target:  5'- cUCCGUGcguGUCUGugGCGcgaACGACGc -3'
miRNA:   3'- cAGGCGCu--CAGACugCGCa--UGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 46648 0.71 0.661663
Target:  5'- cUCCGCGAGUCggGGCuGCGcGCGAUc- -3'
miRNA:   3'- cAGGCGCUCAGa-CUG-CGCaUGCUGua -5'
25511 3' -55.3 NC_005337.1 + 129011 0.72 0.60981
Target:  5'- aGUCCG-GAGUC-GGCGCuGUACGACu- -3'
miRNA:   3'- -CAGGCgCUCAGaCUGCG-CAUGCUGua -5'
25511 3' -55.3 NC_005337.1 + 52985 0.72 0.599459
Target:  5'- -aCCGCGAGaUCaGGCGCGUgcuccuguagcgGCGGCAUg -3'
miRNA:   3'- caGGCGCUC-AGaCUGCGCA------------UGCUGUA- -5'
25511 3' -55.3 NC_005337.1 + 37311 0.72 0.599459
Target:  5'- -gCCGCGAGgagCUGGuCGCGcGCGGCGa -3'
miRNA:   3'- caGGCGCUCa--GACU-GCGCaUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 14142 0.72 0.590164
Target:  5'- aGUCCGCGAGcUCguccuucggcagccgGGCGaUGUACGACAg -3'
miRNA:   3'- -CAGGCGCUC-AGa--------------CUGC-GCAUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 19237 0.73 0.51713
Target:  5'- cGUCCGCGAGUCUGAUGagcuuggccagcaCGU-CGugGUa -3'
miRNA:   3'- -CAGGCGCUCAGACUGC-------------GCAuGCugUA- -5'
25511 3' -55.3 NC_005337.1 + 131216 0.76 0.405702
Target:  5'- aGUCCGCGcuagccgccGGUgUGugGCGUACGugGUc -3'
miRNA:   3'- -CAGGCGC---------UCAgACugCGCAUGCugUA- -5'
25511 3' -55.3 NC_005337.1 + 129547 0.76 0.371763
Target:  5'- cGUCCGUGA-UCUcGACGCGUACGAgAUg -3'
miRNA:   3'- -CAGGCGCUcAGA-CUGCGCAUGCUgUA- -5'
25511 3' -55.3 NC_005337.1 + 77779 0.79 0.275381
Target:  5'- gGUCCGCgGAGUUgggGAgCGCGUACGGCAg -3'
miRNA:   3'- -CAGGCG-CUCAGa--CU-GCGCAUGCUGUa -5'
25511 3' -55.3 NC_005337.1 + 127176 1.06 0.004288
Target:  5'- cGUCCGCGAGUCUGACGCGUACGACAUg -3'
miRNA:   3'- -CAGGCGCUCAGACUGCGCAUGCUGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.