miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25511 5' -59 NC_005337.1 + 129791 0.66 0.762703
Target:  5'- uGCACGUgCUG-GCGaUGCAGagcaCCUGCCGc -3'
miRNA:   3'- -CGUGCA-GAUgCGC-GCGUUg---GGGCGGC- -5'
25511 5' -59 NC_005337.1 + 105353 0.66 0.7756
Target:  5'- gGCuccCGUCgauCGCGUGCuuggucaccucggcGCCCgGCCGg -3'
miRNA:   3'- -CGu--GCAGau-GCGCGCGu-------------UGGGgCGGC- -5'
25511 5' -59 NC_005337.1 + 28029 0.66 0.781055
Target:  5'- uGCAuCGcCUGCcgccgGCaCGCGACCgCCGCCa -3'
miRNA:   3'- -CGU-GCaGAUG-----CGcGCGUUGG-GGCGGc -5'
25511 5' -59 NC_005337.1 + 74416 0.66 0.771939
Target:  5'- cGCcuuCGUCUACcgGCGCauCGACCgcuaCCGCCGg -3'
miRNA:   3'- -CGu--GCAGAUG--CGCGc-GUUGG----GGCGGC- -5'
25511 5' -59 NC_005337.1 + 79108 0.66 0.781055
Target:  5'- gGCACGUCgucgACGCGCaCGAagaCGUCGg -3'
miRNA:   3'- -CGUGCAGa---UGCGCGcGUUgggGCGGC- -5'
25511 5' -59 NC_005337.1 + 33996 0.66 0.752415
Target:  5'- uGCGCGUCUccaGCG-GCGUcaggaggAGCaCCCGCuCGg -3'
miRNA:   3'- -CGUGCAGA---UGCgCGCG-------UUG-GGGCG-GC- -5'
25511 5' -59 NC_005337.1 + 68193 0.66 0.753356
Target:  5'- aGCGCGgcccCggggGCGcCGCuGCGGgCCCGCCu -3'
miRNA:   3'- -CGUGCa---Ga---UGC-GCG-CGUUgGGGCGGc -5'
25511 5' -59 NC_005337.1 + 122260 0.66 0.752415
Target:  5'- gGCAUGaUCaugcgaaaaaacaUGCGCGCGCuGACCgCCGCg- -3'
miRNA:   3'- -CGUGC-AG-------------AUGCGCGCG-UUGG-GGCGgc -5'
25511 5' -59 NC_005337.1 + 17666 0.66 0.781055
Target:  5'- aCACGUCcACGCGcCGC-ACCgCGgCGu -3'
miRNA:   3'- cGUGCAGaUGCGC-GCGuUGGgGCgGC- -5'
25511 5' -59 NC_005337.1 + 124046 0.66 0.768258
Target:  5'- cGCGCGcCUGcCGCG-GCuggagcugccaauGCCCCuGCCGa -3'
miRNA:   3'- -CGUGCaGAU-GCGCgCGu------------UGGGG-CGGC- -5'
25511 5' -59 NC_005337.1 + 131341 0.66 0.798896
Target:  5'- uGCGCGcCgUGCGCGUcggcacuccgGCGACgCCGCUc -3'
miRNA:   3'- -CGUGCaG-AUGCGCG----------CGUUGgGGCGGc -5'
25511 5' -59 NC_005337.1 + 52154 0.66 0.753356
Target:  5'- cGCGCGcUCaUGCGCcaGCGCGGCUUCGaCGg -3'
miRNA:   3'- -CGUGC-AG-AUGCG--CGCGUUGGGGCgGC- -5'
25511 5' -59 NC_005337.1 + 41612 0.66 0.762703
Target:  5'- aGCACGUCgaaGCaGUGCAgcACCUCGuuCCGg -3'
miRNA:   3'- -CGUGCAGaugCG-CGCGU--UGGGGC--GGC- -5'
25511 5' -59 NC_005337.1 + 27477 0.66 0.771939
Target:  5'- aGCGCcgacguGUCcACGCG-GUAGCaCCCGUCGg -3'
miRNA:   3'- -CGUG------CAGaUGCGCgCGUUG-GGGCGGC- -5'
25511 5' -59 NC_005337.1 + 33661 0.66 0.77102
Target:  5'- cGCGCGUCaugGCGCGCaugagguagucguGCAGCCgCGagCGc -3'
miRNA:   3'- -CGUGCAGa--UGCGCG-------------CGUUGGgGCg-GC- -5'
25511 5' -59 NC_005337.1 + 35053 0.66 0.771939
Target:  5'- aCACGggcUUUAUGCGCGCGaagaaGCCgCUGUCGg -3'
miRNA:   3'- cGUGC---AGAUGCGCGCGU-----UGG-GGCGGC- -5'
25511 5' -59 NC_005337.1 + 50409 0.66 0.779242
Target:  5'- cGCGCGUCggugacggagcgGCGgGCGCu--UCCGCCc -3'
miRNA:   3'- -CGUGCAGa-----------UGCgCGCGuugGGGCGGc -5'
25511 5' -59 NC_005337.1 + 118125 0.66 0.762703
Target:  5'- gGCGCGagcgcuacuUCgACGUGUGCggUgCCGCCa -3'
miRNA:   3'- -CGUGC---------AGaUGCGCGCGuuGgGGCGGc -5'
25511 5' -59 NC_005337.1 + 133403 0.66 0.762703
Target:  5'- gGCGCGcUCUuccgcccggccGCGCccGCGCug-CCCGCCGc -3'
miRNA:   3'- -CGUGC-AGA-----------UGCG--CGCGuugGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 36485 0.66 0.753356
Target:  5'- cGCACGgcCUugGC-CGCGGCCgCGgCGc -3'
miRNA:   3'- -CGUGCa-GAugCGcGCGUUGGgGCgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.