miRNA display CGI


Results 1 - 20 of 424 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25511 5' -59 NC_005337.1 + 568 0.7 0.536542
Target:  5'- cGCGCGU--ACGC-CGCGGCCgcgcggaagCCGCCGg -3'
miRNA:   3'- -CGUGCAgaUGCGcGCGUUGG---------GGCGGC- -5'
25511 5' -59 NC_005337.1 + 568 0.7 0.536542
Target:  5'- cGCGCGU--ACGC-CGCGGCCgcgcggaagCCGCCGg -3'
miRNA:   3'- -CGUGCAgaUGCGcGCGUUGG---------GGCGGC- -5'
25511 5' -59 NC_005337.1 + 694 0.69 0.605641
Target:  5'- cGCGCGgaggcgaagCU-CGCGCGCAcGCCCgCgGCCGc -3'
miRNA:   3'- -CGUGCa--------GAuGCGCGCGU-UGGG-G-CGGC- -5'
25511 5' -59 NC_005337.1 + 694 0.69 0.605641
Target:  5'- cGCGCGgaggcgaagCU-CGCGCGCAcGCCCgCgGCCGc -3'
miRNA:   3'- -CGUGCa--------GAuGCGCGCGU-UGGG-G-CGGC- -5'
25511 5' -59 NC_005337.1 + 821 0.72 0.452239
Target:  5'- aGC-CGUCcGCGCGCGCGGgCCCGggcUCGa -3'
miRNA:   3'- -CGuGCAGaUGCGCGCGUUgGGGC---GGC- -5'
25511 5' -59 NC_005337.1 + 821 0.72 0.452239
Target:  5'- aGC-CGUCcGCGCGCGCGGgCCCGggcUCGa -3'
miRNA:   3'- -CGuGCAGaUGCGCGCGUUgGGGC---GGC- -5'
25511 5' -59 NC_005337.1 + 1090 0.7 0.565902
Target:  5'- aGCGgG-CUACaGCcgGCGCAGCgCCGCCGc -3'
miRNA:   3'- -CGUgCaGAUG-CG--CGCGUUGgGGCGGC- -5'
25511 5' -59 NC_005337.1 + 1090 0.7 0.565902
Target:  5'- aGCGgG-CUACaGCcgGCGCAGCgCCGCCGc -3'
miRNA:   3'- -CGUgCaGAUG-CG--CGCGUUGgGGCGGC- -5'
25511 5' -59 NC_005337.1 + 1439 0.69 0.62565
Target:  5'- aGCGCGgcgGCGCcgagguGCGCGACCacguaCGCCa -3'
miRNA:   3'- -CGUGCagaUGCG------CGCGUUGGg----GCGGc -5'
25511 5' -59 NC_005337.1 + 1499 0.7 0.546275
Target:  5'- gGCAcCGUCaccucgGCGCGCGcCAGCgcgUCCGCCa -3'
miRNA:   3'- -CGU-GCAGa-----UGCGCGC-GUUG---GGGCGGc -5'
25511 5' -59 NC_005337.1 + 1727 0.67 0.705259
Target:  5'- cGCACGUUca-GCGCGUcgauguccAGgCCCGCCc -3'
miRNA:   3'- -CGUGCAGaugCGCGCG--------UUgGGGCGGc -5'
25511 5' -59 NC_005337.1 + 1943 0.7 0.526869
Target:  5'- uGCAgGUCUAUGCucugggccaGCGCcccCUCCGCCGc -3'
miRNA:   3'- -CGUgCAGAUGCG---------CGCGuu-GGGGCGGC- -5'
25511 5' -59 NC_005337.1 + 2086 0.71 0.479591
Target:  5'- cGCACGgugucgGCGCGCGCcgcgAGCCCgGUCa -3'
miRNA:   3'- -CGUGCaga---UGCGCGCG----UUGGGgCGGc -5'
25511 5' -59 NC_005337.1 + 2188 0.67 0.743906
Target:  5'- cGCACGgcgcaggcggCggacGCGgGCGCGGCCCgGgCCGc -3'
miRNA:   3'- -CGUGCa---------Ga---UGCgCGCGUUGGGgC-GGC- -5'
25511 5' -59 NC_005337.1 + 2245 0.66 0.753356
Target:  5'- cGCGCGaggaACGCGUcguauaGCGACCCCGUg- -3'
miRNA:   3'- -CGUGCaga-UGCGCG------CGUUGGGGCGgc -5'
25511 5' -59 NC_005337.1 + 2381 0.74 0.337115
Target:  5'- cCGCGUCcACGUGCGCG--CCCGCCu -3'
miRNA:   3'- cGUGCAGaUGCGCGCGUugGGGCGGc -5'
25511 5' -59 NC_005337.1 + 2721 0.68 0.685547
Target:  5'- aGCACGa----GCGCGaCGACgUCCGCCGg -3'
miRNA:   3'- -CGUGCagaugCGCGC-GUUG-GGGCGGC- -5'
25511 5' -59 NC_005337.1 + 2946 0.68 0.635665
Target:  5'- cGCACGgc-GCGCaugaGCGCGGuCUCCGCCu -3'
miRNA:   3'- -CGUGCagaUGCG----CGCGUU-GGGGCGGc -5'
25511 5' -59 NC_005337.1 + 3029 0.73 0.400226
Target:  5'- uGCGCGcCgAUGUGCGCGACCacguaCGCCa -3'
miRNA:   3'- -CGUGCaGaUGCGCGCGUUGGg----GCGGc -5'
25511 5' -59 NC_005337.1 + 3108 0.66 0.779242
Target:  5'- cGCGCGcaucagcagcagCaGCGUGUGCAGCaCgCGCCGg -3'
miRNA:   3'- -CGUGCa-----------GaUGCGCGCGUUG-GgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.