miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 11673 0.68 0.799426
Target:  5'- aACACGCCGCcGC-CcGCgugGUCCAGg -3'
miRNA:   3'- -UGUGCGGUGaCGuGaCGaugCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 91256 0.68 0.799426
Target:  5'- gACACGCUAgaGUGCaGCUGCGUgagccgcaCCAGc -3'
miRNA:   3'- -UGUGCGGUgaCGUGaCGAUGCA--------GGUC- -5'
25512 5' -55.8 NC_005337.1 + 129922 0.68 0.799426
Target:  5'- aACAcCGCCGcCUGCGaaaaGCUcauCGUCCAGg -3'
miRNA:   3'- -UGU-GCGGU-GACGUga--CGAu--GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 132194 0.68 0.790218
Target:  5'- cGCGCGCCGacaccgUGCgccuGCUGCUGCGgcaCGGg -3'
miRNA:   3'- -UGUGCGGUg-----ACG----UGACGAUGCag-GUC- -5'
25512 5' -55.8 NC_005337.1 + 59733 0.68 0.790218
Target:  5'- cACGCGCCGCgcgGCGgaGC-GCGUCUc- -3'
miRNA:   3'- -UGUGCGGUGa--CGUgaCGaUGCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 44304 0.68 0.789289
Target:  5'- -gGCGCCGCUcccccgaGCGCgUGCUGCGgCCGc -3'
miRNA:   3'- ugUGCGGUGA-------CGUG-ACGAUGCaGGUc -5'
25512 5' -55.8 NC_005337.1 + 87965 0.68 0.780862
Target:  5'- -uGCGCCugcACgggGCGCUGCUGCGgUUCAc -3'
miRNA:   3'- ugUGCGG---UGa--CGUGACGAUGC-AGGUc -5'
25512 5' -55.8 NC_005337.1 + 6567 0.68 0.780862
Target:  5'- -gACGCCA--GCGCUGCgcgGUCCGGa -3'
miRNA:   3'- ugUGCGGUgaCGUGACGaugCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 130788 0.68 0.780862
Target:  5'- gGCGcCGCCGgUGCgGCUGCUGCGcuucUUCGGc -3'
miRNA:   3'- -UGU-GCGGUgACG-UGACGAUGC----AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 47966 0.68 0.780862
Target:  5'- cGCGCGCgAgUGCGgcGCggacGCGUCCAGg -3'
miRNA:   3'- -UGUGCGgUgACGUgaCGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 100283 0.68 0.761745
Target:  5'- -gACGCCGCUggagacGCGCauccuggGCUGCGUCCc- -3'
miRNA:   3'- ugUGCGGUGA------CGUGa------CGAUGCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 127970 0.68 0.761745
Target:  5'- cCGCGCCAUgcgcgaggUGCGCUGCaACG-CCGa -3'
miRNA:   3'- uGUGCGGUG--------ACGUGACGaUGCaGGUc -5'
25512 5' -55.8 NC_005337.1 + 95928 0.68 0.761745
Target:  5'- cGCGCGCCuc-GCGCU-CcACGUCCAGc -3'
miRNA:   3'- -UGUGCGGugaCGUGAcGaUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 86388 0.68 0.761745
Target:  5'- aACAUGuCCGCcagGCgGCUGCgcGCGUCCGGc -3'
miRNA:   3'- -UGUGC-GGUGa--CG-UGACGa-UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 122149 0.68 0.761745
Target:  5'- cACACGCCGCUGUACUaCgcCG-CCAu -3'
miRNA:   3'- -UGUGCGGUGACGUGAcGauGCaGGUc -5'
25512 5' -55.8 NC_005337.1 + 50312 0.68 0.752003
Target:  5'- cGCGcCGCCGCUGCcCUGCgcggacCGcCCGGu -3'
miRNA:   3'- -UGU-GCGGUGACGuGACGau----GCaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 37245 0.68 0.752003
Target:  5'- aGCACGuCCACgucGCAgUUGCgguUGUCCAGg -3'
miRNA:   3'- -UGUGC-GGUGa--CGU-GACGau-GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 126867 0.69 0.742151
Target:  5'- -gACGCCGCUGCACcuCUGCGUgCu- -3'
miRNA:   3'- ugUGCGGUGACGUGacGAUGCAgGuc -5'
25512 5' -55.8 NC_005337.1 + 45947 0.69 0.742151
Target:  5'- cGCGCGCCg--GCGC-GCgugGCGUCCAc -3'
miRNA:   3'- -UGUGCGGugaCGUGaCGa--UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 29788 0.69 0.7322
Target:  5'- gACuguCGCCGCUGCGCgUGCUccGCGugcUCCGc -3'
miRNA:   3'- -UGu--GCGGUGACGUG-ACGA--UGC---AGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.