miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 48992 0.67 0.842938
Target:  5'- aGCAUGCUGgUGUuccagaaccgGgaGCUGCGUCCGGu -3'
miRNA:   3'- -UGUGCGGUgACG----------UgaCGAUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 70875 0.67 0.842938
Target:  5'- aGCGCGCCAUguccagcGCGCU-CUGCGgcgCCAc -3'
miRNA:   3'- -UGUGCGGUGa------CGUGAcGAUGCa--GGUc -5'
25512 5' -55.8 NC_005337.1 + 122548 0.67 0.842938
Target:  5'- cGCGCGCUGCaGcCGgUGCUGC-UCCAGc -3'
miRNA:   3'- -UGUGCGGUGaC-GUgACGAUGcAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 83446 0.67 0.842938
Target:  5'- cGCACGCCA-UGguCUGCUGCGg---- -3'
miRNA:   3'- -UGUGCGGUgACguGACGAUGCagguc -5'
25512 5' -55.8 NC_005337.1 + 95676 0.67 0.834601
Target:  5'- aGCACGCCcacGCUGCGCUcGCgccACG-CCu- -3'
miRNA:   3'- -UGUGCGG---UGACGUGA-CGa--UGCaGGuc -5'
25512 5' -55.8 NC_005337.1 + 66079 0.67 0.834601
Target:  5'- gACGCgGCCGCggcggcggagGCGCUGUgcgGCGUCUg- -3'
miRNA:   3'- -UGUG-CGGUGa---------CGUGACGa--UGCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 118747 0.67 0.834601
Target:  5'- -gACGauGCUGCGCUGCUgcugcgcgACGUCCuAGa -3'
miRNA:   3'- ugUGCggUGACGUGACGA--------UGCAGG-UC- -5'
25512 5' -55.8 NC_005337.1 + 70043 0.67 0.826073
Target:  5'- -aGCGCCGCaaagagGCGCUGCc-CGUCgCGGa -3'
miRNA:   3'- ugUGCGGUGa-----CGUGACGauGCAG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 85006 0.67 0.826073
Target:  5'- uCACGCC-CUGCACg---AUGUCCAc -3'
miRNA:   3'- uGUGCGGuGACGUGacgaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 95306 0.67 0.826073
Target:  5'- gGCGCGCgGC-GCGCUGUUGCGcUCg-- -3'
miRNA:   3'- -UGUGCGgUGaCGUGACGAUGC-AGguc -5'
25512 5' -55.8 NC_005337.1 + 42544 0.67 0.826073
Target:  5'- gACGCGCUGCggGCGCUGgUGCGgcugcggCUGGa -3'
miRNA:   3'- -UGUGCGGUGa-CGUGACgAUGCa------GGUC- -5'
25512 5' -55.8 NC_005337.1 + 604 0.67 0.817363
Target:  5'- -aACGCCACgcagGCgaACUccGCgucgGCGUCCAGc -3'
miRNA:   3'- ugUGCGGUGa---CG--UGA--CGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 111424 0.67 0.817363
Target:  5'- aGCGCGCCGCgguccaGCACgaGCggguCGUCCu- -3'
miRNA:   3'- -UGUGCGGUGa-----CGUGa-CGau--GCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 604 0.67 0.817363
Target:  5'- -aACGCCACgcagGCgaACUccGCgucgGCGUCCAGc -3'
miRNA:   3'- ugUGCGGUGa---CG--UGA--CGa---UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 43364 0.67 0.808477
Target:  5'- -gACGCCGCUGCGCgugUGCUucuACccCCGGg -3'
miRNA:   3'- ugUGCGGUGACGUG---ACGA---UGcaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 15338 0.67 0.808477
Target:  5'- cGCgACGCaCGCUGCGCccGCgcgACGcuUCCAGg -3'
miRNA:   3'- -UG-UGCG-GUGACGUGa-CGa--UGC--AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 128269 0.67 0.808477
Target:  5'- -gACGCCGCUGCACgcgGCg--GUCUg- -3'
miRNA:   3'- ugUGCGGUGACGUGa--CGaugCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 33409 0.67 0.808477
Target:  5'- uGCGCGUCAUcgGCACgGUgagcGCGUCCAc -3'
miRNA:   3'- -UGUGCGGUGa-CGUGaCGa---UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 25739 0.67 0.808477
Target:  5'- cGCGCGCC-CcGCACcgucGCgcCGUCCAGc -3'
miRNA:   3'- -UGUGCGGuGaCGUGa---CGauGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 44940 0.67 0.80668
Target:  5'- cAUGCGCCACcuguuuaUGCACUucugcgagcaccgGCUGCGcUCCAa -3'
miRNA:   3'- -UGUGCGGUG-------ACGUGA-------------CGAUGC-AGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.