miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25512 5' -55.8 NC_005337.1 + 95340 0.66 0.866727
Target:  5'- aGCGCGCCGugGCGCUGCgACa-CCGGg -3'
miRNA:   3'- -UGUGCGGUgaCGUGACGaUGcaGGUC- -5'
25512 5' -55.8 NC_005337.1 + 86385 0.66 0.866727
Target:  5'- cCGCGuuuauCCACUGCGCgcagaaGuCUGCGUCCGc -3'
miRNA:   3'- uGUGC-----GGUGACGUGa-----C-GAUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 105783 0.66 0.865965
Target:  5'- cGCGCGCCGC-GCGCcGC-GCGgccgcauccgugcUCCAGg -3'
miRNA:   3'- -UGUGCGGUGaCGUGaCGaUGC-------------AGGUC- -5'
25512 5' -55.8 NC_005337.1 + 85631 0.66 0.859008
Target:  5'- -gGCGUCcaGCUGCGC-GCUgGCGUCCGc -3'
miRNA:   3'- ugUGCGG--UGACGUGaCGA-UGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 1983 0.66 0.859008
Target:  5'- uGCACGCCGggucgGCgucaGCUGCggcuUGUCCGGg -3'
miRNA:   3'- -UGUGCGGUga---CG----UGACGau--GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 2802 0.66 0.859008
Target:  5'- cGCAUGUgCACUagGCGCUGCUgcaggACGUCaCGGu -3'
miRNA:   3'- -UGUGCG-GUGA--CGUGACGA-----UGCAG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 35439 0.66 0.859008
Target:  5'- cGCACGgCGCgguggGCGCgaccGCgacCGUCCAGu -3'
miRNA:   3'- -UGUGCgGUGa----CGUGa---CGau-GCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 131164 0.66 0.859008
Target:  5'- cACACGCUGCUGCuGCUGaUGCG-CgCGGa -3'
miRNA:   3'- -UGUGCGGUGACG-UGACgAUGCaG-GUC- -5'
25512 5' -55.8 NC_005337.1 + 91214 0.66 0.859008
Target:  5'- gGCGCGCCGCcggUGguCaGC-GCGUCCAu -3'
miRNA:   3'- -UGUGCGGUG---ACguGaCGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 97692 0.66 0.859008
Target:  5'- uGCACGCCGCgcugGCggACcgGCUAgGUgCGGa -3'
miRNA:   3'- -UGUGCGGUGa---CG--UGa-CGAUgCAgGUC- -5'
25512 5' -55.8 NC_005337.1 + 126125 0.67 0.851076
Target:  5'- cGCACGCCG-UGCGCgcgGCcaugcccgGCGUCCc- -3'
miRNA:   3'- -UGUGCGGUgACGUGa--CGa-------UGCAGGuc -5'
25512 5' -55.8 NC_005337.1 + 6253 0.67 0.851076
Target:  5'- cUugGCCGacucguCUGCGCggaGC-ACGUCCAGc -3'
miRNA:   3'- uGugCGGU------GACGUGa--CGaUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 42492 0.67 0.851076
Target:  5'- cACGCGCgaGCUccugaaGCUGCggACGUCCAGc -3'
miRNA:   3'- -UGUGCGg-UGAcg----UGACGa-UGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 105665 0.67 0.851076
Target:  5'- uAC-CGUCACUGUcCUcgUGCGUCCAGa -3'
miRNA:   3'- -UGuGCGGUGACGuGAcgAUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 124564 0.67 0.851076
Target:  5'- ----cCCGCUGCGCgagGCcGCGUCCAa -3'
miRNA:   3'- ugugcGGUGACGUGa--CGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 4586 0.67 0.851076
Target:  5'- gGCGCgGCgACUGCGCgUGCUG-GUgCAGg -3'
miRNA:   3'- -UGUG-CGgUGACGUG-ACGAUgCAgGUC- -5'
25512 5' -55.8 NC_005337.1 + 92989 0.67 0.851076
Target:  5'- cGCugGCCGUgaugGCGCUGCgcgagACGUaCCAc -3'
miRNA:   3'- -UGugCGGUGa---CGUGACGa----UGCA-GGUc -5'
25512 5' -55.8 NC_005337.1 + 6673 0.67 0.851076
Target:  5'- uGCAC-CCACaGCACgacucgGCgACGUCCAc -3'
miRNA:   3'- -UGUGcGGUGaCGUGa-----CGaUGCAGGUc -5'
25512 5' -55.8 NC_005337.1 + 120448 0.67 0.851076
Target:  5'- uGCGCGCCccACaugGUcCUGauCUGCGUCCGGg -3'
miRNA:   3'- -UGUGCGG--UGa--CGuGAC--GAUGCAGGUC- -5'
25512 5' -55.8 NC_005337.1 + 132159 0.67 0.851076
Target:  5'- -aACGCCGCUGCAC-GCgUGCcugaCCGGg -3'
miRNA:   3'- ugUGCGGUGACGUGaCG-AUGca--GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.